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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30119_PI390587928Hv_44K_v2TGTTCTCCTTCTGTCCATTGCAATATCAAGATATGATAAATAGGCAGTAGCCATTTCTGC607GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.5300.6260.8371.2961.2261.462
Raw 10.30019.35622.91955.81517.71923.571



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_21867.59249e-22808 - 8659857 / 58plus None
MLOCMLOC_21867.112049e-221088 - 11459857 / 58plus None
MLOCMLOC_21867.211779e-221055 - 11129857 / 58plus None
MLOCMLOC_21867.311089e-22986 - 10439857 / 58plus None
JLOC1JLOC1_15156.210435e-22897 - 9549857 / 58plus
JLOC1JLOC1_15156.111975e-221051 - 11089857 / 58plus
Harvest35U35_117986903e-25608 - 66710060 / 60plus



Contig Sequence (690 bp)

>U35_11798 690 Hv_44K_v2
TCGCAATTTTGATGCTGGATTGGCTGAATGCTGCCATCATGAGAGAATCAGTTTGCTGGC
CTACAGCCCAATGGCAATGGGTATACTTTCAGGGAAGTATCACTCATCCGATGACAGCGG
TCCGCTAGATGCAAGGATGAATCTTTTCAAAGGAAGATACTCCGAGGGTGAATCCAGATA
CAATCTGCAGAACCCCAAATTAGAATCGGCAGTGAAGGTGTGGTAGTAGCAAACCTCTAT
CTTCTTCGTGCTTACATATTAATCCTTATAAACTATTTCAGGAATATACAAGAATTGGCG
TCAAGTATGGCATTTCGCCATCAACCCTGGCAGTTGGTGTGTTACCACAAAGTTTATGTT
CTTTTCAATGTTGCATTTTTTGCCATCAGTCACTGATCATTTCCTCTCATCTTTATGATT
TTAGCATTTGTACTGAGACACCCCCTCGTGGGGTCAGCTGTTTTCGGTGTTACTAAATTA
TGGCAGCTCGAGCAAGTTTTTCAGGCCACATGCGTGCATGTCTGTGAAGAAATTTTGGCA
GAGATCGATGATGTGCATGCAAGATTTTGCAATCCTTGTCCATAATGTTCTAAAATATGT
TTTTTTTTGTTCTCCTTCTGTCCATTGCAATATCAAGATATGATAAATAGGCAGTAGCCA
TTTCTGCAAAAAGAAAAAAAAAAAAAAAAA



Homology of Contig U35_11798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os11g42540.13598e-53protein|oxidoreductase, aldo/keto reductase family protein, putative, expressed
Brachypodium v1_2Bradi4g11550.13601e-57
Arabidopsis v10None