barSeed - Barley Seed Development Database

Probe CUST_30118_PI390587928

Source Contig U35_11799

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30118_PI390587928	Hv_44K_v2	AAGACTACATCGGTTAAGCAGTAAGGATGACAACAACGATAATCATCCAGTATCATCTGA	550	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.343	1.058	1.128	0.741	0.504	0.351
Raw	187.045	215.233	216.199	207.722	52.648	40.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49454.2	3398	2e-24	33 - 92	100	60 / 60	minus	None
MLOC	MLOC_49454.3	3404	2e-24	33 - 92	100	60 / 60	minus	None
MLOC	MLOC_49454.1	3607	2e-24	137 - 196	100	60 / 60	minus	None
JLOC1	JLOC1_31658.2	3407	8e-25	3316 - 3375	100	60 / 60	plus
JLOC1	JLOC1_31658.1	3401	8e-25	3310 - 3369	100	60 / 60	plus
Harvest21	ABC25336	613	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_11799	613	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_11799 613 Hv_44K_v2
GTTCAAGTAAGGGATGGGGAGGTTCAGTAAATATAGCAGATTCTCTTGGTGATGATGAAG
CTGACTATGATATACCACATGAACCATATGATGGTGATAAGAATGGAGATTCATCTTCTG
GTGAACGGGAAGGCGATACTCAGAAGAGCATGGGCGCCAGAGACAAAAGGAGCATATTAC
TGTCACTTTCAGACAGTGAAGCTGAGGATAATGATAGGACTACTATATCTAGAGGCTCTC
AGAATAAAGAGGCCCCAAAGAGACGAGGGCGATCCATTTTTAATGAAGAGCAAGAGAAGC
TTATCAGAGATCTTCATGAGAAATATAAGGATGACCGCAAATGCAGTCATCTAATTGCTG
AAGCTCTAGATCCCAGTGGAAAGATATCGTCGGCTCAAATTTCTCGAAAGCTTACACAGC
TAGGTCTCAGGAATGTCACTAGGAGGACAAAAGTTCCAGAGGCATCTCTTTCAGCAGAAG
GTCTGGTTGCACAACCGCAAAACGACATGCTGGATGATCCCCAGCCAGAAAGCACACGGC
GCAGAAGGAAAAGACTACATCGGTTAAGCAGTAAGGATGACAACAACGATAATCATCCAG
TATCATCTGATGA

Homology of Contig U35_11799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11980.1	1208	4e-74	protein\|timeless protein, expressed
Brachypodium v1_2	Bradi2g15960.1	1132	9e-84
Arabidopsis v10	None