barSeed - Barley Seed Development Database

Probe CUST_30114_PI390587928

Source Contig U35_23772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30114_PI390587928	Hv_44K_v2	TGTTTCATAGTTTCACTGCTGTAGCCTGTACGAGTATCAATGGTCGACAACAAAGCGTAC	600	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.148	1.307	1.114	0.853	0.338	0.333
Raw	2622.527	4588.000	3477.117	4157.977	585.903	625.143

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358309	2409	7e-23	2334 - 2393	98	59 / 60	plus	ABC22128
MLOC	MLOC_61940.2	1175	7e-23	743 - 802	98	59 / 60	minus	ABC22128
MLOC	MLOC_61940.1	1937	7e-23	1164 - 1223	98	59 / 60	minus	ABC22128
JLOC1	JLOC1_40506.1	1592	4e-23	592 - 651	98	59 / 60	plus
Harvest35	U35_23772	685	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (685 bp)

>U35_23772 685 Hv_44K_v2
ACATAAGTTGCCTGCAGGGCTTGGTAGAAAGCCTCCTGAGAGGCTTAAAGATGGCTTTGT
CGTTGCCCTAAGGACAAGAGATAATTCGGGTTTTCATGTTTCAAGAGAAAGAGTTGCTGG
TGGTGGCTGGTATCTTGATGTTGTGTCAAATGCTACAAAGAGGGATCCTGCTGCTCAGTT
CCTAATCACATTTAAAAACAAGGATACGATGGGATTGCGATCTTTTGTTGCTGGGGGCAA
ACTTTTGCAGGTTAATAAGAAGGCGGAGCTCGTATTTGCCAATCATGCATTCGATGTCTG
GGAGAGCTGGACGCTGGAAGGGTCTTTACTGGAATGCTGCAAACTGGTCAACCACAGAAA
TCCTTTGGCTGTATTGGAGGTCTACATTGAAATCCTCGCAGCGGTGAGCGAAGAAGATGG
CGTCACGAGGTGGCTCGATTGATCAACGACCCATCCATCTGCTTTAGGAGAACGAGAGCA
ACAGACTCATCGGTGTTGTATTCTCGCTGGCCTGGGGGTTCACTCAGTTTTCCCCTTTTT
CCTGTCAAGTGTTCAGTTTTGGCCATTCTATTACAGAGAACTACAAAGCCACTGCCAAAT
TGTTTCATAGTTTCACTGCTGTAGCCTGTACGAGTATCAATGGTCGACAACAAAGCGTAC
TGCCAGTCCAAAAAAAAAAAAAAAA

Homology of Contig U35_23772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38900.1	651	3e-79	protein\|erythronate-4-phosphate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi3g31947.2	631	4e-86
Arabidopsis v10	AT1G01510.1	636	1e-54	\| Symbols: AN \| NAD(P)-binding Rossmann-fold superfamily protein \| chr1:187235-189836 FORWARD LENGTH=636