barSeed - Barley Seed Development Database

Probe CUST_30107_PI390587928

Source Contig U35_35750

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30107_PI390587928	Hv_44K_v2	ATGATGCCTGGCGAGTGGGTGTTGTTCATTTTTCTATGGAAATAAAATGGATAGATCTTG	414	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.019	2.400	1.325	0.474	0.076	0.061
Raw	84490.033	76229.300	37566.633	20024.890	1253.363	1066.970

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_48938.1	1397	8e-25	1247 - 1306	100	60 / 60	plus
Harvest35	U35_35750	474	3e-25	415 - 474	100	60 / 60	plus
Harvest35	U35_24122	1079	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (474 bp)

>U35_35750 474 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTTCATAATGCTCGAGCGGCCGCTGGCGTAGCAGGACTAC
TACGACGAAGACGCGGGCAAATTCGTCGATGCGTTGAACAAGAGCATAAAGGGGGCGTGG
TTAGACAAAGTGCAGGAATGGGAGGAGTGCGCCAAGAACCAGACGGCGTGCTCGGACATA
TATGGGTCGGAGAGCATCGCTGCAGCATGCGACTCGGCGTACAAGAACGTGACAGAGGGT
TCGACGCTGGGCGATGAGTATTTCGGAAGCAGGCTGCCGGTGGTCAAGTTGAGGCTGGCG
CAAGGCGGCGTCCGATTGGCAGCTACGCTCAACAGGATATTTGGTGAATCCAAGCCTTAG
TGATTATCATGTCGGGTTTTATAGACTGCAAGTGATTTTTGTAAATTGGCACAGATGATG
CCTGGCGAGTGGGTGTTGTTCATTTTTCTATGGAAATAAAATGGATAGATCTTG

Homology of Contig U35_35750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None