- Probe CUST_30102_PI390587928
- Source Contig U35_47734
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30102_PI390587928 | Hv_44K_v2 | TCTTTTCTTGGACACCCTCGCTGTTTTTTTTAATGACACCTCTTACTTTGGGCCGCTGAA | 159 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.381 | 1.224 | 1.149 | 0.766 | 0.289 | 0.258 |
| Raw | 74.714 | 55.101 | 48.876 | 48.276 | 5.626 | 5.289 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC49082 | 226 | 3e-25 | 160 - 219 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_47734 | 226 | 3e-25 | 160 - 219 | 100 | 60 / 60 | plus |
Contig Sequence (226 bp)
>U35_47734 226 Hv_44K_v2 CCAAGCAGTTTTCGCGCTGGCCGGCGGCGCCGACGCGAGGAAGATGGNCGGCGNGNACGA GCTCAAGAGAGGCGATNNCTCCGNCAAGTTTTTTTACTGGGGCGCCACCATCATGTCCAT CCTCGNCCCTGATTCCTTTTTTTTTTTGGCCGAAGNAGATCTTTTCTTGGACACCCTCGC TGTTTTTTTTAATGACACCTCTTACTTTGGGCCGCTGAATGGGAGG
Homology of Contig U35_47734 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |