barSeed - Barley Seed Development Database

Probe CUST_300_PI415269222

Source Contig TA47222_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_300_PI415269222	Hv_44K_v2	GATGATTTTTGGATCTGTTAAGACTTAAGCGTGCAATCAATCAGCAGTTTTTACCATTGC	427	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55820.3	5267	2e-23	3135 - 3192	100	58 / 58	minus	ABC10314
MLOC	MLOC_55820.2	5331	2e-23	2801 - 2858	100	58 / 58	minus	ABC10314
JLOC1	JLOC1_36044.2	2463	1e-23	1399 - 1456	100	58 / 58	minus
JLOC1	JLOC1_36044.1	2580	1e-23	1516 - 1573	100	58 / 58	minus
Harvest35	U35_6260	546	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (487 bp)

>TA47222_4513 487 Hv_44K_v2
ACCTTCCTCGGCCGGCCGTGGGGCGCGTACGCGCGGGCCGTGGTCATCGGGTCCTACCTG
GGCCCGCTCGTGGACCGCGACGGGTGGACGGGCTGGCCCGGCGCGGAGCCGGGCCGCGCA
GACACGGTCTACTTCGGGGAGTACGGGAACGAGGGGCCCGGCGCCGGCACGGACGGGCGC
GTGGGCTGGGCCGGGTTCCACGAGATGGGCTACGACGAGGCCGCCCAGTTCGCCGTCGAC
AAGTTCATTTACGGCGACGACTGGCTCGCCGCCACCTCCTTCCCCTACGACCAAGGCATC
TGAACTACGCGGGGTCTGCAGAATTCAGAGGCTAATCTTGAGCCGTTACTGCGTTAAATT
CCGGTGAGATGTTCAGTAAGTTCTGTTGAATCCGTCTGTGTCATGAACACATTATCCAAC
TGAATCAGATGATTTTTGGATCTGTTAAGACTTAAGCGTGCAATCAATCAGCAGTTTTTA
CCATTGC

Homology of Contig TA47222_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g09340.1	586	6e-53	protein\|pectinesterase, putative, expressed
Brachypodium v1_2	Bradi1g46720.1	153	1e-55
Arabidopsis v10	None