barSeed - Barley Seed Development Database

Probe CUST_30094_PI390587928

Source Contig U35_23785

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30094_PI390587928	Hv_44K_v2	GATGAACATGAAGAAGTTGAGCTCGGCCAAGAGCATCAAGAGGATGAACTCGCTCGGCGG	708	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55792.4	2000	2e-24	992 - 1051	100	60 / 60	minus	ABC38745
MLOC	MLOC_55792.6	1926	2e-24	867 - 926	100	60 / 60	minus	ABC38745
MLOC	MLOC_55792.2	2128	2e-24	1132 - 1191	100	60 / 60	minus	ABC38745
MLOC	MLOC_55792.5	2096	2e-24	1024 - 1083	100	60 / 60	minus	ABC38745
MLOC	AK362022	1897	7e-23	720 - 779	98	59 / 60	plus	ABC38745
MLOC	AK365791	4336	7e-23	2404 - 2463	98	59 / 60	minus	ABC01916 ABC38745
JLOC1	JLOC1_36028.1	2337	8e-25	993 - 1052	100	60 / 60	plus
Harvest21	ABC21768	755	3e-25	506 - 565	100	60 / 60	plus
Harvest35	U35_23785	958	3e-25	709 - 768	100	60 / 60	plus

Contig Sequence (958 bp)

>U35_23785 958 Hv_44K_v2
GAATCGCCTGCGCCACTTGCAATCGTCGCCGCCTCCTCGATCCACTTCCCACCCCCAGCT
TTGCACACACCTCCCACCATTTCCAACCAACTTGAGGCAGAGGGAGAGGGAAGGAGTGTC
TTCTTGCCCAAGACCCGCCATGGATTCCCCACGGATGGAGCAGGAGAGCAGCGGCGGCGG
TACTGGTTCTGCTACCATCACAAATCCAATGCAAGGAGGAGTCGGAGGAGGATGCCCCGC
GCCTGACGAACAGCAGGCCAAGAGGCCGCCGCACCTCTCCATCGACATCCCGGCGGCGAG
CCCAAGCAGCGTGCCCCCCACACCGACGGCGTCGGCAGAGGCGGAAGCAGTAGCAGCAAC
GCCGGGCTCCAACGCCAGCAGAACGCCCGGTTCAGGCTCGGGTTCAGGTTCCGGCAAGAA
CGGTGCCCCGGCGAAGCCCCCGGCGCCGCAGCGCACGCCGTCCTTCATGCTCAGGCAGAC
GGTGCGGAGCCTCCTGCCGGGAGGCGGCAGCTTCAAGTCGTCGGTCAGAGGGTACGAGGC
CTCCCTCTCCAGGCTCTTCAGCGGGAGGATCGCCAGGACGGCGTCGCTCCCGGCGGTGGA
CGATGGCGCGCTCTCGGCCTCGGCGCACGGCGCCGGTGACAAAACCCAGCAGAGCGTTCC
TGCTGCTGCAGCTGACAAGACGGGCATGCACCGGTCGCAGTCCCTCCCGATGAACATGAA
GAAGTTGAGCTCGGCCAAGAGCATCAAGAGGATGAACTCGCTCGGCGGCGTGTACCGGGT
CGTGCCCTCCACGCCGCGAGCCCCCGCCGCCGCCGCCGCGACGAGCAATGCCGCGCCGGA
CATAGTCCCCACAGAACCAGGGGNCCGGAGAGGAGGAAGACGACCCACGGAGAGGACATT
CGCGGAGGAGGAGGCGGTGTGCCGGATCTGCATGGCGGAGCTCTCCGAGGGGGCGGCG

Homology of Contig U35_23785 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None