barSeed - Barley Seed Development Database

Probe CUST_30082_PI390587928

Source Contig U35_16922

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30082_PI390587928	Hv_44K_v2	CAACATCGGCTGTTCTGGAGATTTATATTATACCCGTGATGAATTTTGGTCAGATATAAA	2442	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.776	1.398	1.153	0.924	0.408	0.360
Raw	18076.700	22269.303	16201.133	20522.180	3173.630	3068.097

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57554.2	2700	2e-23	9 - 66	100	58 / 58	minus	ABC06795
MLOC	MLOC_57554.1	2712	2e-23	66 - 123	100	58 / 58	minus	ABC06795
JLOC1	JLOC1_37321.2	2633	1e-23	2536 - 2593	100	58 / 58	plus
JLOC1	JLOC1_37321.1	2329	1e-23	2232 - 2289	100	58 / 58	plus
Harvest21	ABC06795	2528	3e-25	2443 - 2502	100	60 / 60	plus	ABC06795
Harvest35	U35_16922	2554	3e-25	2443 - 2502	100	60 / 60	plus

Contig Sequence (2554 bp)

>U35_16922 2554 Hv_44K_v2
CGCCGTCTGCCTCGCCCAAACCCTCCCCAAAACCCTAGTCGACTCGGGGAACTAGGGTTC
CTCCCCGCCGCCGCCGCCGCCAACCTCCCGCCGAGCTCAGAAATACTACCATGGGTAAGT
CGAGCAAGAAGTCCGCTGTCGAGGCTGCACCTGCCGCTGCGCTGGTCCCAGATGTAAAAT
CTGGAAAGAAAGGCAAGAGAAATGCGGAAGATGACATTGAGAAGGCTGCCAGTGCCAAGA
AGCAGAAAACTGCACCTGAGAAGGTCGTGCCCGTGAAAAGTTATCTTAAAGTCAAGAAGA
AGCTCCCTGCAAAGAAGGTCGAGAGCAGCAGTTCTGATGAGGATTCTTCAGAATCTGAGG
ACGAGGTGATGGTTCAACCAAAGAAGGCTGCACTGTCTTCTAAACAGGAGTCCAGCTCTG
ATAGCAGTGATGAGAGCAGTTCTGATGATGAACCTGCTAAAAAGCATGCTGCTGCTTCAA
AGAAACCTGCTGCACTTGCTACCAATGGTTCAAAGATTGTCAAGTCTGACAGCAGCAGCT
CTGACAGCAGCTCTGATGAGGATGTGATGGTCCTACCCAAGAAGGCTGCACAATCTGCTA
AACAGGAGTCCAGCTCTGATAGTAGTGACGAGAGTAGCTCTGATGATGAACCTGCAAAGA
AGTCTGCTGCCGCTTCAAAGAAACCTGCTGCAAAGACTGAAGAGTCAGATAGCAGCAGCT
CTGATGAGGATGAAGATATGCTTCCCGCTAAAGCACCAGCAGCTGCCAAGAAGGTTGAAG
AATCCAGTGAAAGCTCTGATTCTGAAAGCTCTGACTCTGAGAAGCCAGCTAGTGAAGTGA
AGAATTCTGCGGTTGCTACTGCACAAAAGAAAAACCAGGAATTGGATGGCTCTGACAGTG
ATTCTGATGATTCATCAGATGAGGATATGGCCACTAAAAAACCAGTAGCCAAGAAAGTGG
CAGAATCCACTGAAAGTTCTGATTCTGACTCTGAGGACGAGGGTACCACTGCTAAACCAG
TTCAATCTTCCAAGGCTGTTGCTGTTAAGAAGGACAAAGAATCTAGTGATAGCTCAGATT
CTGACTCAGATTCAGATTCTGAAGAAGATACCACCGTTAAAACAGTTCCTATAAAGAAAG
AAGAATCTAGTGGCAGCTCAGATAGTGACTCGGATTCAGATTCTGTTGAACCAGCAAAGT
CTACTATTCCTGTGAAGAGGCCTCTGACAACAGAGAAAAAGAGCAAACATTCCAAGGACG
ATTCTGATGATAGTTCTGATGAGAGTGATGAAGAAGAGCCTCCACAAAAGAAGCCTAAGG
ATTCATCTTCTGGTGCTGCCAAGCCAGTCTCTAATGCTGCCAAGAAAGAAAGCAGTGATG
ATGATAGTTCTGAAGAGAGCTCTGACAGTGATGAGGAAAAGAGTAAATCGGTGGCTGTGG
CAAAACCCAAGCAGAGCGAACCAAAAACTCCTGCCAGCAGTGGTCAAGCTACTACTGGGT
CAAAGACCCTTTTTGTTGGGAATCTGTCATACAATGTGGAGAATGACGAAGTGAAGCAAT
TTTTTGGGGAGGCGGGTGAGGTGTCTGATATTCGTTTTGCTACTGCTGATGATGGGAGCT
TCAAGGGTTTTGCACATGTTGAATTTGCCACAACTGAAGCTGCTCAAAAGGCATATGAAC
TAAATGGACATGATTTGTCGGGGAGGCCTGTCAGGCTTGATTTTGCTCGTGAGCGAGGCG
CTATCACTCCTGGCAGCGGGAGGGACAATAGTTCTTTCAAGAAGTCAGGTCAAAGCAATA
CTGCCTTTGTCAGAGGATTTGATTCATCTCTTGGGGAGGATGAGATCCGAAGCTCGCTTC
AAGAACATTTTAGCTCATGTGGAGCGATTGGAAGAGTTTCAATCCCGAAGGATTATGAAA
CTGGCACAAGCAAAGGGATAGCATACGTGGAATTTACTGACGGGAATTCTTTGCCCAAAG
CGCTTGAGCTGAACGGATCTAACATTGGAGAATTCAGCTTGTTTGTTGATGAAGCCAAGC
CTAGGGCAGATAACAGAGATGGCACAGATGGTGGTAACAGGAGAGGAGGAAGGTTTGACA
GGGGCACGGGCCGCAGAGGTGGTGGAAGGTTTGACAGGGGCACGGGCCGCAGAGGTGGGG
CAAGAGGCGGCCGGGGTGACAGAGGTGGCCGGAGTGACAGGGGCCGTGGTCGGGGTGGTG
CACCCCCCAGGCAGAGTGCTGGCACACCTAGTGCAGGGAAGAAGATAACTTTCGGTGATG
ACTGAGCTTTGGTGATTCCGCTTGAAACCGCGCAGAAACTCCAACCCACCCACCCCTGGT
GAAACGTGAAACTAGTGAAATGTCAAACATTTCCTTTTTGCCTGGAGACTCTACTTCTTC
TGTTTTTATGTTATCTTATTATTACCGTGGTTATCTGCCACACAACATCGGCTGTTCTGG
AGATTTATATTATACCCGTGATGAATTTTGGTCAGATATAAAAAAAAAAATGTCTTCCTT
TGGTGGTTTGACCTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52960.1	708	4e-85	protein\|nucleolin, putative, expressed
Brachypodium v1_2	Bradi5g22117.1	742	6e-96
Arabidopsis v10	AT1G48920.1	557	9e-57	\| Symbols: ATNUC-L1, PARL1, NUC-L1 \| nucleolin like 1 \| chr1:18098186-18101422 FORWARD LENGTH=557