barSeed - Barley Seed Development Database

Probe CUST_30081_PI390587928

Source Contig U35_16923

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30081_PI390587928	Hv_44K_v2	CTATACTTATTTGTCGGGAGGTATCATCTGTTACGTCCCTTTTAATGGCTCTGTTACAAA	1212	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.078	1.353	1.324	1.147	0.449	0.391
Raw	1485.060	2912.221	2465.227	3320.900	468.632	438.029

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63995.2	1234	6e-24	1164 - 1222	100	59 / 59	plus	ABC06940
JLOC1	JLOC1_41975.3	1145	3e-24	957 - 1015	100	59 / 59	plus
JLOC1	JLOC1_41975.2	1221	3e-24	1033 - 1091	100	59 / 59	plus
JLOC1	JLOC1_41975.1	1385	3e-24	1197 - 1255	100	59 / 59	plus
Harvest21	ABC06940	1100	1e-24	1031 - 1089	100	59 / 59	plus	ABC06940
Harvest35	U35_16923	1286	3e-25	1213 - 1272	100	60 / 60	plus

Contig Sequence (1286 bp)

>U35_16923 1286 Hv_44K_v2
CCCTCCCTCCACAACAAAACAAATCTGCTCCCCCCTTCCCCTTCCTCCCCTCCTCTCTCC
TCCCCTCCTTCCATCGCCGGCGCCGCACCCTCCAATTCCGCCATGCCGAAGGGCGCCAAA
AAGCGCGCGAAGCTCAAGAAGAAGCAGCAGGGGGGCCAGCCCGCCGGGTCCAACGGCGGC
GCCACCACCACCAACAACAACGACGGAAGCAATAACTCGAGCCACGGCGACGCCGCCAGC
GATGGAAACCACCTACCAATCAAACTTACCATTCCTCCCGTGGACGCAAGCGAGGATTCC
ATGGAGAGCTCCGAGGAGATGGTGACGCCGAGGGCGGAGGTGGCCGACGAGGAGAGCAAG
GGCGCCGCGTCGGAGGTGCCGGTTGAGCGCGCCGTCGAGGTCGCCGATGAGGGCGCCACG
GGCGAGGCCGGGGAGGAGGTCATGGTTGACGCTTTGCCGCCTGAAGCTGCTGATCCGGAG
CAAGAGGGTAAGGTGGACGTGACGGCGGAGGCGCATGCCGTGGTGCAGGAACCGGAGGTG
CAGGACGTCGTGGTGTCCGAAGCACCCGAGGTGCTGGAACCAGAGGTGAGGAGCGAGGAG
GTCGTGGTCCGGGACACGGCCAAGGTGCATCCTGCGCATCAACCGGAGACGGAGACGAAG
GCCGAGGGGGTGGTGGTCAGGGATACGGACACGGCTGCTGTGGTGCAGGAACCGGAGGCA
AAGGATGAGGTGTCACGGTCTCGTGAGCCAGCTCCTGCGCAGACTACAGAGGTTGTACGG
GGACCGGCAGTGGCGGTTGCTGCTGCGGGGCATCGGGCAAAATGGTGGAATTGCTGTGGG
ATTTTGGATGTCTTTGCTGGTTCAGAGAGATAGATGCAGGTACATGAATTGGAAGGAACT
TGGGAAGCAAGAAGGCAGAAGATGCAAAGTTGTGCAAAGCTGATGGGTACTTGTAACTAG
GCTCGTTGAGTGCTCACGCAGAAGATGGAGTTGGAAGGATTTCGAATTGACATCGAGCTG
ATGCTTCTCTCCACCCGTGTTTACCGTATCTTGCTGTGCAAAGTTACATTGTATTGGTTG
TGGTTAAAATCCTGGGTGTAGTATTCTGAATATTACCCCCCCTTGTCTAGTGGAGTATGT
TCTAGGTTCTGCTGTCCTTGTAGCATATGAGTTAAAAAGTGGGTCAACAGTGAAAATTTT
GGTCTTTACTTTCTATACTTATTTGTCGGGAGGTATCATCTGTTACGTCCCTTTTAATGG
CTCTGTTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_16923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None