barSeed - Barley Seed Development Database

Probe CUST_30076_PI390587928

Source Contig U35_16928

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30076_PI390587928	Hv_44K_v2	GTCGATTAGTGACAGTGCAGATGCCGCCTGTACATGTACTGCCTCCATTTCTAAATACAA	1569	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.012	1.422	2.499	1.422	0.461	0.364
Raw	18.409	41.010	64.749	57.020	5.188	4.819

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08302	1657	3e-25	1572 - 1631	100	60 / 60	plus	ABC08302
Harvest35	U35_16928	1655	3e-25	1570 - 1629	100	60 / 60	plus

Contig Sequence (1655 bp)

>U35_16928 1655 Hv_44K_v2
TGTTGTCATGGTAGTGCTCATGTCAATATCCTTTGTATTAGCCCAGCCATGGTTCCGACG
TAACAAGCTCAAGCCCACTAATCCACTCAAGAAGATGACTGGTTTCAACGCCTTCTGGTT
TACGCACCACCTATTTGCTATTGTGTATGCGCTGCTCATCGTCCATGGAACAAGTTTGTA
CCTAACCAAGGAGTGGTACAAGAAAACGACATGGATGTACATCGCTTATCCTGTCTTCTT
ATATTTGTGCGAGCGCATTGTTCGGTTGTTTAGAAGCAATGATGCAGTTAAGATTCAGAA
GGTTGCGGTATATCCTGGGAATGTGTTGGCTCTTTATATGACCAAGCCACCTGGTTTCAG
ATACCGAAGTGGGCAGTACATCTTTATAAATTGCGGCGCTGTATCTCCATATGAATGGCA
TCCATTTTCCGTTACATCAGCACCAGGAGATAATTACTTGAGTGTCCACATTCGCACAAG
GGGTGATTGGACTTCTCGGCTTAGGACTGTCTTCTCTGAGGCGTGTCGGCCTCCGACTGA
AGGAGAAAGTGGACTCCTTAGAGCTGACCTCTCCGTGGGAATCACTGACAGCAACGCAAG
ATTCCCTAAACTTATGATCGACGGGCCATATGGTGCTCCAGCACAAGATTACCGGGAATA
CGATGTGCTGCTGCTCATCGGGCTTGGCATCGGAGCCACCCCTTTGATCAGCATTGTGAA
GGATGTGCTTAACCACATCCAGCGCGGTGAATCGGTTGGCGGAACAGAGCCGGACGGCAG
TGGCAAGGCAAAGAAGAAACCGTTCATGACCAAGAGGGCCTACTCCTACTGGGTCACAAG
GGAGGAAGGCTCCTTTGAGTGGTTCAGAGGGGTGATGAACGAGGTGGCCGAGAAGGACAA
GGATGGAGTGATCGAGCTCCACAACCACTGCTCGAGCGTGTACCAAGAGGGCGATGCTCG
GTCCGCGCTCATCGTCATGCTCCAGGAACTCAACCATGCCAAGAAGGGGGTCGATATTCT
GTCCGGGACCAGCGTCAAGACCCACTTTGCCCGGCCTAACTGGCGAAGCGTCTTCAAGCG
CATCGCAGTCAACCATGAGAATCAGCGCGTTGGGGTCTTCTACTGCGGCGAGCCTGTTCT
TGTGGCGCAGCTGCGGCAGTTGTCGGCAGACTTCACCCACAATACCAACACAAAGTTTGA
GTTTCACAAGGAGAATTTCTAATTACACATATGTATGTAGCTATAATGTAAGAACCTGCC
TTTCTATGGTCTGCGTCATCATAATAAGGTAGAGAAATAATAATCCAAGTTTTTTTTATA
TGGACCGGTTTAGATGTTATGGCGAGATCTCAATTTCTGAACAAATCGCGAAACTGGTGG
CACTTTGGGCTTGCTCTTCTCTAGGCTCTAGCTCCAAAAGTATCAAATCTGAAAATCAAC
TCCGACAAAAAGATGACAGCTAAAAAATCACCTTGAGCTCGGGAGGTCGGACAAGCGTTG
GGCGGAGCTGCTACTAGTTAAAGTCATAGTCTCTCGTGCACCTGAACTCATCAAGCTATT
TCGTGGTGCGTCGATTAGTGACAGTGCAGATGCCGCCTGTACATGTACTGCCTCCATTTC
TAAATACAAGTCTTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g25820.1	906	protein\|respiratory burst oxidase, putative, expressed
Brachypodium v1_2	Bradi2g12790.2	902
Arabidopsis v10	AT5G47910.1	921	\| Symbols: RBOHD, ATRBOHD \| respiratory burst oxidase homologue D \| chr5:19397585-19401768 FORWARD LENGTH=921