barSeed - Barley Seed Development Database

Probe CUST_30075_PI390587928

Source Contig U35_16929

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30075_PI390587928	Hv_44K_v2	CTTGCGCCTTGCAATGCAATCAAGTTGCAATCATAACATGGTATTAGAGTTTAAGTCTAA	844	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81745.1	3472	9e-22	10 - 67	98	57 / 58	minus	ABC08301 ABC08302
MLOC	MLOC_81745.3	3490	9e-22	9 - 66	98	57 / 58	minus	ABC08301 ABC08302
MLOC	MLOC_81745.4	3488	9e-22	9 - 66	98	57 / 58	minus	ABC08301 ABC08302
MLOC	MLOC_81745.2	3466	9e-22	10 - 67	98	57 / 58	minus	ABC08301 ABC08302
MLOC	MLOC_81745.5	3573	9e-22	9 - 66	98	57 / 58	minus	ABC08301 ABC08302
JLOC1	JLOC1_54377.4	4289	5e-22	4216 - 4273	98	57 / 58	plus
JLOC1	JLOC1_54377.3	4292	5e-22	4219 - 4276	98	57 / 58	plus
JLOC1	JLOC1_54377.2	4231	5e-22	4158 - 4215	98	57 / 58	plus
JLOC1	JLOC1_54377.1	4227	5e-22	4154 - 4211	98	57 / 58	plus
Harvest35	U35_16929	919	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (919 bp)

>U35_16929 919 Hv_44K_v2
CATGTACAAGATTCCCTAAACTTTTGATTGATGGACCATATGGTGCTCCAGCACAAGATT
ACCGTGAATATGATGTGCTACTGCTCATTGGGCTTGGCATTGGAGCCACCCCTTTGATCA
GCATTGTGAAGGATGTGCTTAACCACATCCAGCGTGAGGGATCAGTTCGTGGAACAGAGC
CGGGGGGCACTGGTAAGGCAAAGAAGAAACCGTTTATGACAAAGAGGGTCTACTTCTACT
GGGTCACAAGGGAGGAGGGCTCCTTTGAATGGTTCAGAGGGGTGATGAACGAGGTGGCTG
AGAAGGACAAGGGTGAAGTGATCGAGCTCCACAACCATTGCTCGAGTGTGTATCAAGAGG
GCGATGCTCGTTCCGCACTCATTGTCATGCTTCAAGAACTCCAGCATGCAAAGAAGGGAG
TTGACATCTTGTCCGGAACCAGCGTCAAGACTCACTTTGCCCGGCCTAATTGGCGAAGCG
TCTTCAAGCGTGTCGCGGTCAACCATGAGAATCAGCGTGTCGGGGTTTTCTATTGTGGTG
AGCCTGTTCTTGTGCCGCAGCTGCGGCAGTTGTCGGCAGATTTCACCCACAAGACAAACA
CAAAGTTTGAGTTTCACAAGGAGAACTTCTAGTAGTGTAGCTTGTATAAGAATATGTCTA
TGCCATGCTTCATCAGGTGAATTGTATGGGTTGTATTATTATTTTGTAAAGGTGGGAAAT
AAAATGGGAGTGGTTTTGCCTAGTCCTGTGTTCAGTCTTGTTTACTCTATGTTGTTAAGG
AGTATATATCAGTATTAGGTTTAGGAATCCTATTTGGCTATGCTTCCTTTCCTTGTATCC
AAGTCTTGCGCCTTGCAATGCAATCAAGTTGCAATCATAACATGGTATTAGAGTTTAAGT
CTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g25820.1	906	1e-129	protein\|respiratory burst oxidase, putative, expressed
Brachypodium v1_2	Bradi2g12790.2	902	2e-133
Arabidopsis v10	AT1G09090.2	843	2e-96	\| Symbols: ATRBOHB, RBOHB \| respiratory burst oxidase homolog B \| chr1:2932743-2936495 FORWARD LENGTH=843