barSeed - Barley Seed Development Database

Probe CUST_30053_PI390587928

Source Contig U35_16941

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30053_PI390587928	Hv_44K_v2	TGAGCTGTTCTGCTAGGTAGCTGATGCCTGATGGAATAATGCATGGATGGATGTAAAAAA	806	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.162	1.292	1.335	0.885	0.269	0.299
Raw	245.656	406.731	390.086	399.383	42.557	52.989

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29942.1	264	9e-22	152 - 206	100	55 / 55	plus	None
JLOC1	JLOC1_19862.1	418	5e-22	307 - 361	100	55 / 55	plus
Harvest35	U35_16941	877	3e-25	807 - 866	100	60 / 60	plus

Contig Sequence (877 bp)

>U35_16941 877 Hv_44K_v2
GGGGAAGGTCTCTCTTGTGCTTTGTTTCATTCATGGGCGTGGATGATATAGGCAGCAGGA
TGGATTCGGCACTAAGCCGGCGTGAACCACAAATTTCCCATGAAAGGAGCTATTCGCAAT
GATCATGCTGTTGCCAAGACTAAGAGAACCAGTGTTATATCAGGTGATGCCTTTTGCCAC
TTGAGAGATCCAGCATGACATCAATCCATGAGCTATACAGTTATATTCCCTCTGTTGGCT
ATACACTTCTATTGAGCATATAAATGGCAAGCCAGCTCTAGATTGGTCGAGGAGAAAGAT
GATAGCACTGGGTACAGCACGAGGGCTGCTTTATTTGCACGAACAGTGTGATCCAAAAAT
AATCCATTGTGATGTAAAAACCTCCAATGTGCTTCTTGATGAATATTTTGAAGCAATAGT
CGGAGAAGACATATGTGTTTGGGTTTGGAGTCCTGTTGGTTGAGTTGATCACTGGCCAGA
AAGCATTGGATTTTGGAAGACTAGCAAATCAGAAGGGTGGAGTGCTTGATCTGGTAAAGA
AGCTCCATCAGGAAAAGCAGCTGAACATGATGGTGGAGAAGGACCTCGGCAGCAACTACG
ACAGGGTGGAGCTGGAGGAGATGGTGCAGGTGGCTCTGCTGTGCACGCAGTACTTTTTTC
TTCCTCATGTTTTTGCCTTGCAAAGTTGCAACGAACGTGCTGCACTATCTGTAAAATACA
AATACTGGAGCCAAGTGTCTACAACGTTATACTGTGCGCACTGTTTTCCTGTAGGCTGTC
TGTGTGCGTTTTTGTTGGTACTGTTTTGAGCTGTTCTGCTAGGTAGCTGATGCCTGATGG
AATAATGCATGGATGGATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07630.1	629	5e-62	protein\|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi2g04420.1	634	1e-63
Arabidopsis v10	None