barSeed - Barley Seed Development Database

Probe CUST_30052_PI390587928

Source Contig U35_16942

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30052_PI390587928	Hv_44K_v2	TTGGCATGAAAATGTAAATCTGATAAGAAGCTGCGCGCAAGGTGAAATCTGCGGCCTAAA	1422	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.303	2.203	1.127	0.816	0.296	0.510
Raw	65.961	95.743	43.739	49.625	5.491	11.780

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_33182.1	2498	4e-23	1433 - 1492	98	59 / 60	plus
Harvest35	U35_16942	1496	3e-25	1423 - 1482	100	60 / 60	plus

Contig Sequence (1496 bp)

>U35_16942 1496 Hv_44K_v2
ATAAAATAAATTTCCTCTTCCTCTCGACTCGGATCGACTCGACTCCGATGGCGATGTCGA
CGGCGACCCGGATGCTGGCGCGCCGCGCCGTCCCCGGCCACCTCCTCCGCAACGCCAACC
CCGCAGCCGCGACGGCGGCTCTGCTGCAACGGCGGTTGTACCGCGGGGGAGCGGACCCTG
CGCCGTCCTTGTACCACCCGCCGCCGACCCCGGCGAACCTGGGCCTGAGCATCGTCCCGG
AGAAGAAGGCGTTCGTGGTGGAGCGCTTCGGCAAGTACCTCAAGACGCTGCCGTCGGGGA
TCCACCTCCTCATGCCCGGCGTCGACCGCATCGCCTACGTCCACTCGCTCAAGGAGGAGG
CCATCCCAATCCCAGACAACTCGGCAATCACAAAGGACAACGTATCAATACAGATCGGAG
GAGTGCTATACGTCAAGATCGTCGACCCCTACATGGCCTCGTACGGCGTCGAGAACCCCA
TCTATGCTGTCATCCAGCTTGCCCAGACAACAATGAGGAGTGAGCTTGGCAAGATCACCC
TCGACAAGACCTTCGAGGAGAGGGACACGCTCAACTTAAACATTGTGAAGTCAATCAATG
AGGCAGCTGAAACTTGGGGTTTGAAGTGTCTTCGCTACGAAATCAGGGACATCACTCCTC
CAGATGGAGTCAAGAAGGCCATGGAGATGCAGGCCGCAGCAGAGCGCAAGAAACGTGCTC
AGATCCTTGAGTCTGAAGGTGCTATGATGGAAAAAGCAAACAGAGCAAAGGGTGAAGCTG
AAGCGATTCTTGCCAGGTCACAAGCCACTGCTGAAGGGATCAGGATGGTCTCTGAGTCGT
TTAAAACTGAAGGCAGCACAGAGGCTGCCAGCTTGAGGATTGCTGAACAGTACATCAGAG
CATTCAGTGAACTGGCTAGAACTACGAACACGATGCTTCTCCCCAGCGACGCAGGCAATC
CGGGGACAATGATTGCTCAGGCCCTTCAGATATACAACCACACGTACAAGCAGAAACTGA
CGCTGGGAAGCCCCAGCCCCAGCAAGCAGGCGGTGGCGGCAGAAGAGGCTGATTTGTCCC
TTGGGATGCCATCCGTGAGCGACCTCGGCACCTTTCCGCACCAGAAGTAAAGCAGTTTTT
TTTTTTTTTACTGTTTTGTTAGGGAGGAATGGATAGCTAGACTGGATAGATAGATTGCTA
GGGAGGCAGTGCAACTGGGTCACGAGTGAAGATTTGCTGATTAGGTAGGTCGGTCGGTTA
GGAGCAGCTTGAGAGCAAGCTTTTTGTGTGTCTATATGAATGGGTGGTGTTAGATGCAGA
ACCTTTGAATATGTTGCATGAGATATTTGCGGTTTTGGTCTTTAAAAAAAAAAAAAAAAA
GTTTTTTTCTCTCTGAAGTCTGAAGTTTTTGTTGCGTACGTTTTGGCATGAAAATGTAAA
TCTGATAAGAAGCTGCGCGCAAGGTGAAATCTGCGGCCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06200.1	378	4e-148	protein\|stomatin-like protein 2, putative, expressed
Brachypodium v1_2	Bradi3g16450.1	351	5e-154
Arabidopsis v10	AT4G27585.1	411	1e-126	SPFH/Band 7/PHB domain-containing membrane-associated protein family \| chr4:13766984-13769832 REVERSE LENGTH=411