barSeed - Barley Seed Development Database

Probe CUST_30047_PI390587928

Source Contig U35_16948

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30047_PI390587928	Hv_44K_v2	GAGAGCACAACTCGGTAAAGTCGTGTAACATTTTCTATCTTCTTGTTTGAGTTTATCTTA	1287	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364861	1501	2e-24	1285 - 1344	100	60 / 60	plus	ABC08212 ABC08213 ABC15809
MLOC	MLOC_70051.2	1047	2e-24	966 - 1025	100	60 / 60	plus	ABC08212 ABC08213
MLOC	MLOC_70051.1	1446	2e-24	33 - 92	100	60 / 60	minus	ABC08212 ABC08213 ABC15809
JLOC1	JLOC1_46463.1	1585	8e-25	1366 - 1425	100	60 / 60	plus
Harvest21	ABC08212	1367	3e-25	1267 - 1326	100	60 / 60	plus	ABC08212
Harvest35	U35_16948	1414	3e-25	1288 - 1347	100	60 / 60	plus

Contig Sequence (1414 bp)

>U35_16948 1414 Hv_44K_v2
AATCCAGTTGCCTGACCACTCCACCAGAGGAACATAGCTCCGGCGCTTCAGTTATTGCCA
GGAGCCCAGGAGAACTGTAGTAGTGATCACCGGCGATATGGCGGCGGCGGCTGGTGATGG
GACGACGAGGAGGAAGACGGCGTGCGTCACCGGAGGGAGCGGGTACATCGCGTCGGCTCT
CGTCAAGATGCTGCTGGAGAAGGGCTACGCCGTGAAGACGACGGTCAGGAACCCCGATGA
CGGGGAGAAGAACGCGCATCTCAAGACCCTGGCGGCGCTCGGCCCCCTGGAGGTCTTCCG
CGCCGACCTGAACGAAGAGGGCAGCTTCGACGACGCCGTCGCCGGCTGCGACTACGCCTT
CCTCGTCGCCGCTCCGGTGGCCCTCATGCCAGAGAACGCCGAGGAAGAAGTGATCCAGCC
GGCGATTCAAGGAACCCTCAACGTGATGAGGTCGTGCGTGAAGGCGGGGACGGTGAAGCG
CGTGGTCCTCACATCGTCGACGGCCGCGATCTCCAGCCGGCCGCTGGAAGGCGACGGCCA
TGTCCTGGACGAGGATTCCTGGTCCGACGTCGAGTACCTCAGGGCCACCAAGAGCGGTAC
CTGGGCGTACCCTGCCTCGAAGGTGCTGGCGGAGAAGGCGGCGATGGCGTTCGCGGAGGA
GAATGGCCTCAGCCTGGTGACCGTGTGCCCCGTGGTCGTCGTCGGCGGGGCACCGGCCAG
CAAGGTCAAGACCAGCGTCCCCGAGGTCCTCTCCTTGCTCTCCGGCGACGACGACATGGT
GGACAACCTGGAGCTCATCGAGAAGGCGTCGGGGTCGATCCCGCTGGTGCACATCGACGA
CGTGAGCCGCGCCGAGATATTCGCCGCCGAGGAGGCCAAATCGGGGCGGTACATCGTGTG
CACCCTCAACACCACCGCCGTGGCGCTCGCCCACTTCCTGGCGGCCAAGTACCCGCAGTA
CGAGATCAACGACGACCGCATTGGTCATCTTCCGGAGAAGCCGAGGGTGAGCATCTGGTC
GGACAAGCTCATCAAGGAGGGGTTCGAGTACAAGTACAAGAACCTGGACGAGATATACGA
CGACCTCGTCGTCTACGGCAGGACCCTGGGACTCCTTAAATACTGATATAACAGGCTCTT
CTCTAGAGTCTAGAGTCGACTCAATGATCTCAGAACGACGGGGATTATGCGCTTGCAAAA
ATAAATCTATCCTCCTAGAGGCTAGAGCCTAGAGCACAAAATGTGTTGAAATGTTGGTGC
TTAAGTTTAATTTCTTGATTGCTGACCGAGAGCACAACTCGGTAAAGTCGTGTAACATTT
TCTATCTTCTTGTTTGAGTTTATCTTATAAGAAAGGAAAAAGTGCATTTTCCATCCTGAA
CTCTATCAAAAGTATGTAAATAAATTACTATTTC

Homology of Contig U35_16948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53850.1	345	4e-135	protein\|leucoanthocyanidin reductase, putative, expressed
Brachypodium v1_2	Bradi5g22820.1	346	3e-172
Arabidopsis v10	AT1G61720.1	340	2e-86	\| Symbols: BAN \| NAD(P)-binding Rossmann-fold superfamily protein \| chr1:22791326-22792757 REVERSE LENGTH=340