barSeed - Barley Seed Development Database

Probe CUST_30043_PI390587928

Source Contig U35_28922

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30043_PI390587928	Hv_44K_v2	ATTTCGGGTAAATCGCATTTAATGCAGGAGATGGATTATAGAGAAGAAGCGAGAAATGGA	489	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54671.6	1350	2e-24	28 - 87	100	60 / 60	plus	ABC16379
MLOC	MLOC_54671.5	1264	2e-24	596 - 655	100	60 / 60	plus	None
MLOC	MLOC_54671.1	2789	2e-24	1369 - 1428	100	60 / 60	plus	ABC14708 ABC16379
MLOC	MLOC_54671.7	1456	3e-21	51 - 104	100	54 / 54	plus	ABC16379
JLOC1	JLOC1_35194.7	2269	8e-25	631 - 690	100	60 / 60	plus
JLOC1	JLOC1_35194.4	1655	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35194.1	1660	8e-25	717 - 776	100	60 / 60	plus
Harvest21	ABC28043	706	3e-25	490 - 549	100	60 / 60	plus
Harvest35	U35_28922	706	3e-25	490 - 549	100	60 / 60	plus

Contig Sequence (706 bp)

>U35_28922 706 Hv_44K_v2
GGCGCTGCGCTACCTCGACAGCCTCAACGAGCGCGCCGACGACATGTTCGAGATCAGAGC
TGCTCAGCTCAGGAGGATCCTGCTGGAGCTTGGCCCGGCATTTGTGAAGATTGCACAAGC
AGTTTCGTCTCGGCCGGATGTGATCCCTCCTGCATACCTTGATGAGCTTTCACTACTTCA
AGACCGTATAGCACCATTTTCCACTGAGGTTGCTTTTGATATTATAGAGAAAGAGCTTGG
GATGCCACTCGACATGATTTTCTCTGAAATGTCACCAGTGCCTGTTGCTGCTGCATCTCT
TGGGCAGGTTTACCAGGCTAGGTTACGTTCCAATGGGAAGTTGGTTGCCGTAAAAGTACA
AAGGCCTGGAGTCCAAGCCGTAATTTCCTTGGATATCTATATCTTGAGGTTCCTCGCTGG
TGTTGCCAGGAAGGCTGGCAAGCTCAACACAGACCTTCAGGCTGTCCTTGATGAATGGGC
ATCAAGTCTATTTCGGGTAAATCGCATTTAATGCAGGAGATGGATTATAGAGAAGAAGCG
AGAAATGGACTTAAGTTCAGGCAATTATACGGGAAACTTAGAGATGTCATGGTTCCAGAA
ATGTATCTGGAACAGACGAGAAGACGGGTCCTTATCATGGAATGGGTTGAGGGGGAAAGG
TTATCAGAAGTCAGAGATCAATACCTGGTTGAGGTTGGAGTATACT

Homology of Contig U35_28922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g54790.1	721	2e-109	protein\| ELMO/CED-12 family protein, putative, expressed
Brachypodium v1_2	Bradi5g23450.1	705	4e-112
Arabidopsis v10	AT1G71810.1	692	7e-86	Protein kinase superfamily protein \| chr1:27002602-27007964 REVERSE LENGTH=692