barSeed - Barley Seed Development Database

Probe CUST_30041_PI390587928

Source Contig U35_28924

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30041_PI390587928	Hv_44K_v2	TCCTCTAATCGTCGGAAGCCTCTTGCAAGATGTGGTCCAAATGATATCCGTCATGTTTGT	99	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365733	4220	3e-22	2814 - 2872	98	58 / 59	minus	ABC07620 ABC12169 ABC14799 ABC15296
MLOC	MLOC_67216.3	1524	3e-22	116 - 174	98	58 / 59	plus	ABC12169 ABC15296
MLOC	MLOC_67216.1	344	3e-22	159 - 217	98	58 / 59	plus	ABC15296
MLOC	MLOC_67216.2	1647	3e-22	159 - 217	98	58 / 59	plus	ABC15296
JLOC1	JLOC1_44351.1	1911	1e-22	116 - 174	98	58 / 59	plus
Harvest21	ABC28047	682	3e-25	100 - 159	100	60 / 60	plus
Harvest35	U35_28924	682	3e-25	100 - 159	100	60 / 60	plus

Contig Sequence (682 bp)

>U35_28924 682 Hv_44K_v2
GCTTAGTCTAACTTTCAAGCTGGAGGAGCCCCTTGTTCACAAGACAGGAGAGCAGAGCCT
GGTAGTGATTGAGGTGAAGAAGCAGTTGTACCTTGCCGGTCCTCTAATCGTCGGAAGCCT
CTTGCAAGATGTGGTCCAAATGATATCCGTCATGTTTGTGGGTCATCTCGGCGAACTCGC
TCTCTCGAGTGCCTCCATCGCAACCTCCTTCGCCGGTGTAACTGGCTTCAGCTTGTTGTC
GGGCATGTCGAGCAGCTTGGACACGCTGTGTGGGCAAGCCTTTGGAGCAAAGCAGCACCA
TCTTCTTGGCATATACATGCAGAGGGCAATCCTTGTGCTCACTCCGGTGAGCGCCGTGGT
TGCCATAATCTGGGGATACACCGGTCAGATCCTTTTGTTGTTTGGGCAAGACCCTGAAAT
TGCCATGGAAGCAGGGAGCTACATCCGATGGATGATTCCGTCGCTTTTTGTCTACGGCCC
GCTGCAGTGCCATGTCCGATTTCTGCAGACGCAGAACATGGTCCTCCCGGTGATGCTGAG
CTCGGGCGTCACAGCGCTGAACCACATCTTGGTGTGCTGGCTGCTCGTGTACAAGCTTGG
CCTGGGCAACAAGGGTGCTGCCTTGGCCAATACAATATCCTACCTCACCAATGTGTCCAT
CTTGGCTCTCTACATTAGGCTC

Homology of Contig U35_28924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11354.1	486	1e-108	protein\|MATE efflux family protein, putative, expressed
Brachypodium v1_2	Bradi5g07160.1	482	1e-116
Arabidopsis v10	AT5G52450.1	486	8e-76	MATE efflux family protein \| chr5:21289042-21291749 REVERSE LENGTH=486