barSeed - Barley Seed Development Database

Probe CUST_30038_PI390587928

Source Contig U35_28927

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30038_PI390587928	Hv_44K_v2	TCGCGTAGAGCTGTCTCTAAGAACAGTGAGATCAAGAAAGATGAACAAACAGTCATAGAA	316	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357441	2087	7e-23	192 - 251	98	59 / 60	plus	ABC14247
MLOC	MLOC_68829.1	1206	7e-23	344 - 403	98	59 / 60	plus	ABC14247
MLOC	MLOC_68829.2	897	7e-23	110 - 169	98	59 / 60	plus	ABC14247
JLOC1	JLOC1_45575.2	935	4e-23	89 - 148	98	59 / 60	plus
JLOC1	JLOC1_45575.1	1021	4e-23	160 - 219	98	59 / 60	plus
Harvest21	ABC28050	637	3e-25	317 - 376	100	60 / 60	plus
Harvest21	ABC25296	556	1e-23	143 - 202	98	59 / 60	plus
Harvest35	U35_28927	637	3e-25	317 - 376	100	60 / 60	plus
Harvest35	U35_25834	558	1e-23	143 - 202	98	59 / 60	plus

Contig Sequence (637 bp)

>U35_28927 637 Hv_44K_v2
GCCGTCGCGAACAGCAGGGGAACAGCGGCGGCGTTCCTCTCAGCGGTAACGTCTCCCGTA
TGCTCCGCCCCTCCCCACGTCCATTTTCTTGAGTTGAATGCGAGGTTTCTTGATTGCATA
AACCCTAGTTTTGAAGTGAGGGTCCGGTTTGCTCCACGTCCCGCCGCCTCCACGCACCCA
CTTGCAGATGCAGCTGCTCCTGCGCTGTGGTTCTCTCCTCCGTCTCTACGAGCGTAGCTG
TGGGCTTCCAAGAACAAATTACAGTTTAGTGCTTCCAAAACTAAACGTGATGAGTGAGAG
GATGCAGGTTACCTATTCGCGTAGAGCTGTCTCTAAGAACAGTGAGATCAAGAAAGATGA
ACAAACAGTCATAGAAAAGGAAGATGACACTGAAAGCACATTGGAGATAGAGCGAATCAG
AGGTGACCCTAGTATGCTCCAATCCATGACAGTGAAAGAACTCAAGGAACTCACAAGGAG
GATGGGAGTTGCTGCGAGAGGTAACAAAAAAGATTTGGTATCAGCTTTGTTGGAATCTCT
GGGTGAGGAAGTAATTGGTAAAGATGGAACATCAACCATTGAGCAGATTGACCCATCAGA
AGTACCTTCGAAAAGAAAAGGTGCCGCTTCTGTAGTG

Homology of Contig U35_28927 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g52540.2	517	1e-56
Arabidopsis v10	None