barSeed - Barley Seed Development Database

Probe CUST_30037_PI390587928

Source Contig U35_16950

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30037_PI390587928	Hv_44K_v2	AGAATCTAGCAACTGATGGAGGTCGTACGCCTGCTAAGGTATGGCAGATTTCAGAAAAAA	2799	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58756.5	3913	7e-23	3831 - 3887	100	57 / 57	plus	ABC06768
JLOC1	JLOC1_38198.1	3869	4e-23	3726 - 3782	100	57 / 57	plus
Harvest21	ABC06768	2870	3e-25	2800 - 2859	100	60 / 60	plus	ABC06768
Harvest35	U35_16950	2870	3e-25	2800 - 2859	100	60 / 60	plus

Contig Sequence (2870 bp)

>U35_16950 2870 Hv_44K_v2
TTCCTGTGGATTATGAAGTTCTAACAAAAGCGCTGCTAGATTCAACAAAATGCTACCTTC
TGGATTGTGGATCTGAAATTTATGTCTGGATGGGTAGAGAAACAGCGCTCGAAGATAGGA
AACAAGCAGGATTGGCAGCTGAGGAATTACTTCGTGAAGGAGATCGACCAAAATCTCACA
TTGTTCGTCTTATGGAAGGATTTGAGACGGTCATTTTCCGATCAAAGTTTAATAAATGGC
CCAAGAAAGCTGAGGCAGTTGTGTCAGATGAGAGCAGAGGAAAAGTTGCAGCCCTTCTTA
AACGTCAAGGATTTAATGTCAAGGCTATAGCAAAATCTGCTCCTGTGAAGGAAGAGCCTC
TACCTCAGATTGACTGCACAGGGAACTTACAGGTTTGGCGCGTAAATGACAGCGAAAAGA
CTTTTCTTTCATTCTCCGAACAATGCAAATTCTACAGTGGAGATTGCTATATCTTCCAAT
ATAGCTACCCTGGTGATGATGGGGAGGAATGTCTTATTGGTACTTGGTTTGGAAAAAAGA
GTATTGAGGAGGAGAGGGCTGCAGCCACTTCACTTGCTAATAAGATGGTTGAGTCTCTAA
AATTCCAGGCAGTTCTGGTTCGCCTTTATGAAGGAAAGGAGCCCATTGAGTTTTTCCCAA
TATTTCAGAATTTGGTTATATTCAAGGGTGGTGCTAGTACTGGGTATAAGAAGTTTGTCT
CAGAAAATGGCATTCAGGATGATACATATTCAGAAAATGGGGTTGCACTGTTCCGGGTTC
AAGGTTCAGGACCAGATAATATGCAAGCAATTCAAGTTGATGCGGTGGCACCATCCCTGA
ACTCTTCGTATTGTTACATACTGCATGATGGAGATACAGTATTTACGTGGATTGGGAACC
TAAGCTCGACAATGGATCACGAGCTCGCTGAGAGGCAACTAGATGTGATCAAGCCAAATC
TCCAGTCCAGAATGCTCAAGGAAGGATCAGAATATGATCAGTTCTGGAAGATACTTGGAA
TAAAGTCTGAGTACTCCAGCCAGAAGATTGCGAGAGATCAAGAAAGTGATCCTCATTTAT
TTTGTTGTACTTTTTTGAAAGGGGTGCTTAAGGTTAGAGAGATATTCAACTTCACACAAG
ATGATATGATGACGGAGGACATATTTATTTTGGACTGTCGTTCATGTGTGTTTATATGGG
TTGGACAAAATGTGGACACAAAAATACGTGCACAAGCTTTGAGCATTGGAGAGAAATTTC
TAGAACTTGACATTCCAATGGAAAACTTATCACGAGAAACACCAGTTTATGTCATCAATG
AAGGAAGTGAGCCCCAATTTTTCACTAGGTTCTTCACTTGGGATTCTGCAAAATCAGCCA
TGCATGGCAACTCATTTGAAAGGAGGCTGTCTATATTGAAGGATGGAATAAAACCAAGAA
GAGATAAACCTAAAAGAAGACCAACGACGTCATCGCACACTGGAAGATCAAGTGTGCCTG
ATAAATCTCAGCGGAGAAGCACGTCTTTCAGCCCTGACCGTGTAAGAGTTAGAGGAAGAT
CACCGGCATTCAATGCATTGGCTGCGACCTTTGAGAATTCAAATGCCCGAAATCTATCAA
CCCCTCCACCAGTTGCGAGAAAATCATTTTCGAAATCTTCCTCCCCTGATCCTGTAAAGC
CACCCCAGAGAGCTGCCTCGATCGCTGCAATGTCTGCTTCATTCGAGCGGCCTAAACAAA
CTCTGATACCAAAGTCAATTAAAGCGAGTCCTGAGGTAAAGAAACCACAATCTGAAGCAA
GCAAACCTAAGCCAGAGGAAGAAGCCAAAGAAAGTACCCCTGCCACAAAGGATGGGCAAA
CTGTGACTCCGACAATACAAGAAGATGTAAAGGAGGATCAGCCCGAAGACGAGGAAGGGC
TTCCTACATATCCATATGATCGCTTGAGGACATCTTCAAGCAATCCTGTCACAGACATTG
ATAGTACAAGGCGTGAGACGTATCTATCTTCATCGGAGTTCAGGGAGAAGTTTGGCATGA
CAAAAGAGGCTTTTGCGAAGCTACCGAAGTGGAAGCAGAATAGGCTCAAGATCGCTCTTC
AGCTCTTTTAAAATCTTCTGCTATGAAACAGGCAGTTATCTCTACTTTGTGAAAGCAATG
ACGGCGAGATTGGTTTTCAAAGGCAAATCTCAAACATGAAGATCTCTCTCGCACTCGTCG
CAATGTTAAGAAGAGACATCGGTAAGTGTAAGCCTATCTGGGTCAAGGGGACCCTTGGTA
GGCGTCTGAGGAGCTGGAGCAGTGAGTTTTGAGCCGCCCATGCCCCCGAATTGTGTGTTG
TCCACTGACGAATTCTCCATGTCGTGTGTCTGGGTCACCGCATTGGCGGTCCGGTCACAC
ACCCTAATTCTTTCCTTTCCAAGGTCACCGGTTTGGTTGTGAGCTTGCAATGCTTTTTCC
TCGCCCCCTTTGAAACCTCACCATTTGTTTCATTCATTCATGCTGTGTATGGTTTCCTGA
CACAAATAATGTTACATATATGGTGTAAGAAGTTAGGTGATGGGATGGACCGGGGCGAGA
GCCCCTTTTGTCGGAAAATCCAGGTGATGAACGGGAGAGCGCCTTGCCCTCGAAATTTGG
TCTTTTAAGTGGTAACTAGTTGTTCCTGCGTGCAAATTTTGTAATCTGATTTACAGCATG
ACTTTGTTCTCTTTAGTGATTCCTGTGTGCAGATTTTGTAATTAGATCCCACGGTTTGTA
TCTACAGACTGACCGTAATTTTGATTTGTATACGTGAAAAGAATCTAGCAACTGATGGAG
GTCGTACGCCTGCTAAGGTATGGCAGATTTCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_16950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g44890.1	1017	protein\|villin protein, putative, expressed
Brachypodium v1_2	Bradi1g31417.1	969
Arabidopsis v10	AT4G30160.2	983	\| Symbols: VLN4 \| villin 4 \| chr4:14754528-14759511 FORWARD LENGTH=983