barSeed - Barley Seed Development Database

Probe CUST_30036_PI390587928

Source Contig U35_16951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30036_PI390587928	Hv_44K_v2	TTTGTTAATTAATTTGTTCGACTACGAGTGATGAATATCAAGTTCTGTTGGTACAAAAAA	1412	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39421.1	1661	3e-22	28 - 83	100	56 / 56	minus	ABC02157 ABC13200
JLOC1	JLOC1_25700.1	1720	1e-22	1579 - 1634	100	56 / 56	plus
Harvest21	ABC13200	1423	5e-23	1332 - 1387	100	56 / 56	plus	ABC13200
Harvest35	U35_16951	1520	3e-25	1413 - 1472	100	60 / 60	plus

Contig Sequence (1520 bp)

>U35_16951 1520 Hv_44K_v2
TCGAGCACTGTTGGCCTACTCCCTCTCTCGCATCACTTTATAAACCTTCTCGCGCACTCA
CACTCTTCACTGCTAGCTTAGCTCGTACTCGTACTGGAACGGCCAGTGCCACTGCTCGTC
CCATTTAAGTACGCGGTACACAACCTAGCTCGCTCTTCTGGGGCGTGGAATGGCGTCGGA
GTGGGAAATGGCCATGGGCGTGGAGCTCGGCATGGGAATGGGATCGTACCACAACGCCGC
CAACGTCAACGCCGCGCCCATGAGCCACCAGTCCGGCGGCTACTCCGCCTCCGCGGCTGC
TCACCATTTCTACGGGATGCAGCCCATGCGCGACGCCAACATGCGCGTGGATGAGCTTAT
GGATCACTTCCCCAGCGCGGGCGCCCACGACTTCTTCCCCGCCGCGCCGGACAACGGACT
CCACCACCACCAGCACCTCGGCGCCGCCGTGGGCGAGCTGTCGGCCACCACCCCTTCCGC
CACGTCGTCCGATCACCAGACGTCGATGCTCTCTTTCGCCGACGAGTTCTACATACCCAG
CGAGGAAGCCGCAGAGCTCGAATGGCTGTCCAAGTTCGTGGACGACTCCTACTCGGACAT
GCCGAATTACTCATCGGCTGCGCATGCGGCAATGGCGGCGGCAAACGCGGCGAACAACAG
CGGCGGTGGCAGCGCGGCTGGTCCAGACAGCTGCGTCACAGCGCTGCCAGGCCGCGGAGC
ACGAAGCAAGCGGTCGCGGGCGAGCGCCGCGGCGGCCGCAGCATGGCACTCCCTCATGCC
GCGCCCGCCCTCGCAGCCATCGCCGTCGTCCTCGTGTTCGTCGTCCGACTTGCCGTCCTC
GACGACGGCACGACCCAGCGGCTCCAACTGTGGCGGCCGCGGTAAGAAGCAGGGACCCGT
TGCCTGCGGGGAGGTGGGCCTGGTGGAAGGCGGCGTGCGGCGCTGCACGCACTGCGCGTC
GGAGAAGACGCCGCAATGGCGAACGGGCCCGCTGGGGCCCAAGACGCTGTGCAACGCGTG
CGGCGTGAGGTTCAAGTCAGGGCGGCTGGTGCCGGAGTACCGGCCGGCGGCAAGCCCCAC
CTTCCTGCTCACACAACACTCCAACTCTCACCGCAAGGTCATGGAGCTGCGCCGCCAGAA
GGAGCTCGTTCTCATCCGCGGCAGCCACCGTCTCGACGCGGCGGCGGCTGGCCCCGGCCC
CGGGGTGACCGTGAAGCCGGAGCTCATGTTCCATGACTACGGCATATGTTGATCGCTTGA
GCTGGTCGTACGGATGGAGCTGGTTAGCCGTGCATCATCGCGCGCCTGCACGCAGCGTAG
CTAGCTAGCTAGATCCCTTTGCAAAATCCTCAAGCCTCTTTTTCTTCACTTTTTTCTCCT
TTTTCTTTTTCCCTCCAGATATCTTGCATCTTTTTGTTAATTAATTTGTTCGACTACGAG
TGATGAATATCAAGTTCTGTTGGTACAAAAAAAAAAAAAAAAAATCCAAATCCACCATTC
CCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40810.1	388	6e-109	protein\|GATA zinc finger domain containing protein, expressed
Brachypodium v1_2	Bradi3g33200.1	362	7e-115
Arabidopsis v10	None