- Probe CUST_30027_PI390587928
- Source Contig U35_28930
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30027_PI390587928 | Hv_44K_v2 | CAAAATTGCTGGCACAGACTGGAGCATAGTAACTACAAGTGATGGAAAGAAATATTACTA | 648 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.920 | 1.617 | 1.132 | 0.715 | 0.719 | 0.741 |
| Raw | 160.148 | 178.263 | 126.799 | 109.696 | 43.379 | 50.234 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367129 | 3510 | 2e-24 | 1542 - 1601 | 100 | 60 / 60 | plus | ABC15216 |
| MLOC | MLOC_5392.2 | 2147 | 2e-24 | 502 - 561 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_5392.3 | 2093 | 2e-24 | 418 - 477 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_5392.1 | 2240 | 2e-24 | 573 - 632 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_3470.4 | 2142 | 8e-25 | 1511 - 1570 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3470.3 | 2049 | 8e-25 | 1501 - 1560 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3470.2 | 2125 | 8e-25 | 1577 - 1636 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_3470.1 | 824 | 8e-25 | 276 - 335 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28054 | 708 | 3e-25 | 649 - 708 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_28930 | 708 | 3e-25 | 649 - 708 | 100 | 60 / 60 | plus |
Contig Sequence (708 bp)
>U35_28930 708 Hv_44K_v2 GCTGCCACCTCGCCCTGAGGTATTTGGGTCTGTTGGGGGTTCTGCACCTGGACAACGTCC TTCAAACTTGTCAACTCCACCAAGCCTCCTTCAGAGGCCTACATGCCCAGCCCCATCTGC TCCTTCTTTGCCTCAAACATCGCCATCAGGTGCTGCACCAGGTGCTGTTCCAAGGGCAAC TCAGCAACAGTTTTATCCATCCTATCCTTCAGCGCATGGTAATCCATCTCAACCCTTGTG GGGATATCCTCCACAACCTACTAGCTTTCAGCAGGCTCCCTTCCATTCATATCCACCGGG CTCTCTTGGACCTCTTGGTGCACCAATGGTTGGAACTTCTTCTGTGACCACGTCCTTGCC CAACATCCAACCACCAGGCATTACAACTGGTGATCCCAAAGAACAACCATCTGTAAATCC AGGATCTGTGCAGTCCATTCATACTTCAGTTGAACAACATCCAACAGGGCTGGAGGACAG AAGTATGGCCGGAATTCAGGATTCAGATACGTGGTCTGCACACAAAACAGAAGCCGGCGT TTTATATTATTACAATGCCTTGACAGGGGAATCAACTTATCAAAGACCACCTGGCTACAA GGGGGAGCTCGAGAAGGTTGCAGCTCAGCCAGTTCCAGCTTCTTGGGACAAAATTGCTGG CACAGACTGGAGCATAGTAACTACAAGTGATGGAAAGAAATATTACTA
Homology of Contig U35_28930 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g34380.1 | 1079 | 7e-101 | protein|retrotransposon protein, putative, unclassified, expressed |
| Brachypodium v1_2 | Bradi3g29247.1 | 1042 | 4e-124 | |
| Arabidopsis v10 | None |