barSeed - Barley Seed Development Database

Probe CUST_30023_PI390587928

Source Contig U35_28937

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30023_PI390587928	Hv_44K_v2	CCGTTAGATACATACTAATAAAACAACTCAATCAACTAGTCAGCCTGGAACCTTAGTCTA	658	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372682	1601	2e-24	353 - 412	100	60 / 60	plus	ABC08444
MLOC	MLOC_40629.1	249	2e-24	58 - 117	100	60 / 60	plus	None
MLOC	MLOC_40630.1	427	2e-24	58 - 117	100	60 / 60	plus	None
MLOC	AK355302	2259	7e-23	859 - 915	100	57 / 57	plus	ABC08444
JLOC1	JLOC1_26546.1	278	8e-25	58 - 117	100	60 / 60	plus
Harvest21	ABC28063	721	3e-25	659 - 718	100	60 / 60	plus
Harvest35	U35_28937	721	3e-25	659 - 718	100	60 / 60	plus

Contig Sequence (721 bp)

>U35_28937 721 Hv_44K_v2
GGCGACGCGGCTCGCCCACGAGGACCAGCGCGGCTGCTCCCCCCTNATCGACCCGGCCGC
CGCGACGACCAGATGGGAGAAGCTCCATGCCGGCGTGGTGGTGCGCCACCGAGCCACCCC
CCACACGCCCTGCACCTTGAATCTAGCCGAGGGAGCTGCGTCTCCAGCCAAGACTACCAC
TGATCGATTCACCTCCGGCGAGAAGCCAGGAAGCAGCAGGGGAGCGCCACCCACCACGCA
GCAGCAGCAGCTCCTTCATCCATGGTCACCTAAAATTGGACCCCCAACTTCATCTGTTAG
GGTACCTAGGAATTTCTACCCACTAGTCAAGACTACAAGTGCAGTAAGTCCAACTTCATC
TGCTAGGGTACCTAAGAATTTTCCTCCAGGAGTAAAGACTACAGGTGAAGTAAGAACTAC
AAGAAAGGACCATGGTTTGCACAAGTGAGTGGTATTTTGCAAGAGGGCTCAGATGTCGGC
TATTATGTTGGGGGAAAGGATTACTTCTTGCCGTTTATTTACACACCTTCTCTTATCGGG
CATTACAAATATTGTTGTTGTTAATACTGTTGTCGACTAACATTCTAGAGGTTGCTACAT
AAAGGAACTTGGAATCAATTATCATTGCTGCAATACAGTGATAAAATTGCTATCACTCCC
GTTAGATACATACTAATAAAACAACTCAATCAACTAGTCAGCCTGGAACCTTAGTCTACT
G

Homology of Contig U35_28937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None