barSeed - Barley Seed Development Database

Probe CUST_3001_PI390587928

Source Contig U35_6298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3001_PI390587928	Hv_44K_v2	GCCATGTGCGCCATTAGTGCTTAGAACTGAATCCTGACTCCAGATATAACTGCAGCAAAT	1482	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14008.3	1334	2e-24	8 - 67	100	60 / 60	minus	ABC13460 ABC15701
MLOC	MLOC_14008.1	1792	2e-24	26 - 85	100	60 / 60	minus	ABC13460 ABC15701
MLOC	MLOC_14008.2	1535	2e-24	26 - 85	100	60 / 60	minus	ABC13460 ABC15701
MLOC	MLOC_14008.4	1488	3e-21	1 - 54	100	54 / 54	minus	ABC13460 ABC15701
JLOC1	JLOC1_9536.2	1546	8e-25	1437 - 1496	100	60 / 60	plus
JLOC1	JLOC1_9536.1	1533	8e-25	1424 - 1483	100	60 / 60	plus
Harvest21	ABC13460	1546	3e-25	1484 - 1543	100	60 / 60	plus	ABC13460
Harvest35	U35_6298	1545	3e-25	1483 - 1542	100	60 / 60	plus

Contig Sequence (1545 bp)

>U35_6298 1545 Hv_44K_v2
GACCAGGTGGCAGGCGGCGGCGCTGTCCGGCGCCGCGGGCTGGGTGTGGGCGGCCTCCCA
CTACGACCTCACGCGCCGGGCGCGCGCGCTGGCGCAACCCTGGGTCACCCGCCGCGTCCA
CGCCGAGACGCCCGACATCATCACCTTCCAGAGGCTGCAGCACAGGTTGCTGGACAACTT
CTTCTCGGTGCTGTCATGCGTTGTCTCTGTCCCTTTCTACACGGGATTCCTCCCGCTCCT
CTTCTGGAGTGGACATGGCAAGTTGGCTAGGCAAATGACCCTGCTGCTGGCATTCTGCGA
TTACCTGGGCAACGCTGTCAAGGATCTAGTGTCAGCTCCTCGGCCGTGCTCCCCTCCTGT
GAGGAGAGTCACAGCTACCGAAGATGAGAAGGAAAATGCCATGGAATATGGACTGCCTTC
GTCACACGCCCTCAATACCGTTTGTTTGATGGGATATATGTTGCACTATGTCCTCACATA
TGGACCATGTAATGGTTTTATGATTGCCACGGGTCTTTCTCTAGCTTTCTTGCTCGTTAC
GTTAATTGGCATTGCGAGGGTATACCTAGGCATGCACAGCTTGACCGATGTTATCGCTGG
GATCTCTTTTGGCATCGTGATCCTTGCATTCTGGTTGGTTGTCCATGATCATGTTGATGC
CTTTGTCGTCTCTGGCCAAAACGTTACATTCTTCTGGGCAAGCCTTGCCCTAGTGCTCTG
CTTTGCATATCCAAAGCCAGAGTTCCCAACTCCTAGCTTTGAATTCCACACAGCATTCAA
CGGGGTCGCTTTCGGAATTGTCTATGGCGTCCAGCAGACATACACCCGTTTCCACGGCCC
CGACGCGCCCCTCATTCTGAGCCATCAACTACCTCTCCTCGCGTACGCCGGGAGGGTCCT
GGTGGGCATCCCGACCATCCTAGCCGTGAAGTCCTGCAGCAAGGCGCTCTCGAAATGGCT
CCTGCCGGTCATGTGCAGCACCCTGGGGATCCCGATCGTCTCGTCCTGCTACGTGCCCAC
GCTGAAGCCGTCAAACAGCAGCTCGGGCGACAAGCCGGACGATGCAAAGCTGGCCGGCGG
GTACCTCCAGAGGGTGTTCTCCCTCTTCCCGCAGAAGGCATACGACGTGGACACGGGCAT
CAGGTTCGTGCAGTACGCCGGGCTCGCGTGGTCGGTGGTCGACCTGGTGCCGGTGATCTT
CACGCACCTCAACCTGTGAAGCCGATCGAATTAGCGGATCAAGGTTAGCGGCATTTTGTT
CATTTCTTGGGAGGACGGCTGATGATCCCTCCTCCATGTCTAGCAGGCAGGCTGTAGATC
CATTGACCTCGGCCTCATTTTTGTGTTGTATGTTTGTCTGTCTAGCACGTCCTCTACGGG
GGTGTTTTCTCTTTTGTACAGTTGTCCAGAGTAGCAACGAGGGAAGTGTACACGTGTTGA
CCTGTATTTTTGCTTGATGATGGGTACAGTTACTGACTGACTGCCATGTGCGCCATTAGT
GCTTAGAACTGAATCCTGACTCCAGATATAACTGCAGCAAATACA

Homology of Contig U35_6298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59070.1	416	0.0	protein\|phosphatase, putative, expressed
Brachypodium v1_2	Bradi1g04840.1	415	0.0
Arabidopsis v10	AT3G58490.1	416	7e-172	Phosphatidic acid phosphatase (PAP2) family protein \| chr3:21633065-21635057 FORWARD LENGTH=416