barSeed - Barley Seed Development Database

Probe CUST_30012_PI390587928

Source Contig U35_6607

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30012_PI390587928	Hv_44K_v2	ACGAAGAACCTAAAGGAGTTCTGCTTAAGCCTTTTGGATGGTACACTCCCTCCATACTTC	1250	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366963	2005	2e-24	1224 - 1283	100	60 / 60	plus	ABC20803
MLOC	MLOC_52769.1	494	2e-24	287 - 346	100	60 / 60	minus	ABC20803
JLOC1	JLOC1_33830.1	1697	8e-25	1311 - 1370	100	60 / 60	plus
Harvest21	ABC13927	1328	3e-25	1251 - 1310	100	60 / 60	plus
Harvest35	U35_6607	1328	3e-25	1251 - 1310	100	60 / 60	plus

Contig Sequence (1328 bp)

>U35_6607 1328 Hv_44K_v2
GGATAGCGCGCCGCGGCCCCTTCCGTTTCCGCGCACGCGCATTCGATCTCCCCTCCTCTC
CTCTCCTCGTGCCGAAGACGTGCGCGCGGGATTCCCTCTCCTAGATCTCGGAGGAGGACG
CGATGAGGGCCACGCGGCGGCTCCTCGCGGCGGCGGCGCTCCTCGCTGCGCTGCTCGCGG
TCTCGGCTGCGGCGAAGCTCGATCTGGACGACGTGGACGACTCGGAGGTGCTGGAGGCGC
TGCTGGCGGTGGACGACGAGGAGGAGGCGGCGCCGCCGGTCTCGGGCGGGGGCGGGGGCG
CGGAGGCGGTGCGGCGGACGCAGTCGATGGTGCTGGTGCTCGACAACGACAACGCCGCGC
GCGCCGTGCAGGACCACCCGGAGCTGCTGCTGCTCGGCTACGCGCCCTGGTGCGAGCGCA
GCGCCCAGCTCATGCCGCGCTTCGCCGAGGCAGCCGCGGCGCTGCGCGCCATGGGGAGCG
CCGTCTCCTTCGCCAAGCTCGACGGGGAGCGGTTCCCCAAGGCCGCCGCAGCCGTCGGGG
TCAACGGCTTCCCCTCCGTGCTCCTCTTCGTCAACGGCACCGAGCACCCCTACACCGGCC
TCCACACCAAGGACGCGATAGTTACTTGGGTTAGAAAGAAGACCGGCACGCCAGTCATTA
GGTTTGAGTCGAGGGATTCAGCTGAGGAATTTCTCAAGAAGGGCCAGACATTTGCTCTTG
GCGTATTCAAGGATTACGAGGGAGCCGACCACGAAGAATTTGTGAAGGCAGCGACTGCTG
AAAATGAGGTTCAATTCGTAGAAACAAATGATAGGAATGTGGCCAAGATTCTTTTTCCAG
GGATTGCATCTGAAGAACAATTCCTGGGCCTTGTGAAAAATGAACCAGAGAAGTTTGAAA
AGTTTGATGGATCATTTGAAGAAAAGGAGATAATTCAGTTTGTGGAGCTTAACAAGTTCC
CACTAATTACTGTATTCACTGATTTAAACTCAGCTAAAGTCTATTCAAGCCCAATTAAGC
TACAGGTCTTCACCTTTGCAGAGGCTTATGATTTTGAAGATCTTGAATCTATTGTTCAAG
AGGTGGCCAGAGGATTTAAGACAAAGATAATGTTTATATATGTGGACACTGCTGAAGAAA
ACCTTGCAAAACCATTCCTGACTCTTTATGGCCTTGAAGGAGATAAACCTACTGTTACAG
CATTTGATACGAGCAAAGGTACTAAATATCTGTTGGAGGCAGATATTAACACGAAGAACC
TAAAGGAGTTCTGCTTAAGCCTTTTGGATGGTACACTCCCTCCATACTTCCGCTCAGAAC
CAGTACCA

Homology of Contig U35_6607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06790.1	534	0.0	protein\|OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed
Brachypodium v1_2	Bradi1g48460.2	490	0.0
Arabidopsis v10	AT1G52260.1	537	4e-109	\| Symbols: ATPDIL1-5, ATPDI3, PDI3, PDIL1-5 \| PDI-like 1-5 \| chr1:19460694-19463346 FORWARD LENGTH=537