barSeed - Barley Seed Development Database

Probe CUST_30003_PI390587928

Source Contig U35_6617

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30003_PI390587928	Hv_44K_v2	GGCTGTTTACTACTCCTGTTTATTACTCCCTCTATTCACAAATATAAGATGTTCCAACTT	786	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.731	5.100	1.185	0.882	0.706	0.629
Raw	55.002	79.830	16.352	19.028	3.223	3.587

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53111.1	2540	2e-24	495 - 554	100	60 / 60	minus	ABC06990 ABC10748
MLOC	MLOC_53110.3	3401	2e-24	885 - 944	100	60 / 60	minus	ABC06990 ABC10748
MLOC	MLOC_53111.2	1824	9e-22	1 - 55	100	55 / 55	minus	ABC10748
JLOC1	JLOC1_34089.1	2207	8e-25	1664 - 1723	100	60 / 60	plus
JLOC1	JLOC1_34088.1	3403	8e-25	891 - 950	100	60 / 60	minus
Harvest21	ABC10748	873	3e-25	787 - 846	100	60 / 60	plus	ABC10748
Harvest35	U35_6617	873	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (873 bp)

>U35_6617 873 Hv_44K_v2
GCGGCCCTGCAGTGTCGCTGAGCACCGTCGATTCGGTGTTGTCAGACCCTCGCGCCGGCG
GCGAGGACAAGGGATGGGACGGCGAGAGCGTGAAGGGCTCCTCGGCCGGTTCCTGCACTC
AGGCCAACTCCTCCCAGGACGGGAGCTGGTTCTCCGTCGTGTCCGAGCAGTCCGGCTCTG
GCGCCTGCAAGGCGGAGGAGAGCCGCACGGAGGAGAACTCTGACGACGCCGACAAGTGCT
GTTCCGGTGACGGCGCTGGTGACGTTGATCGTGATTCAGCGAGGGAAGAAGAAGCTCCTG
CGGCGTCCAGCGGCTCGTCAAAATCCGAAGCGAGCTACCGGGACGGGGAGGACGACAGGC
TCGCGCTGGTGCTGGTGGAACACCCGCACTACAGCGCAGAGGCGGCCGAGGCCGAGGAGA
AGGAGAAGGACGAGCTCGCCATGGTCCTGGCCGACCCCCAGCCGAGCGTGGGCGTCGGTG
GCGGCGACGACGTGCAGTCGGTCCTCCTGGCGCTGCGGCAGGTCAAGGAGCAGCTGCGCT
ACACCATCCAGAGGAGGAGGTCTGAGGGGCTTGTCGCGCACCGAGAGCTCTACGGCCACT
GACTCAGCCTCGCCTGCTCTCAAGAGCATAACGAGAAGCGGAAGCTGAAGTGTGCTGCAC
TTGCACTTGCAGTGGTGTATTTATCTACAGCATTGGGAGTATATTTGGTGGAATAAAGGT
TCTACTGGTGTGAGGCGTTGTAATGGCGGTATATATATTTATATATAAAAAGAAGTGAAT
TCCCTAGGCTGTTTACTACTCCTGTTTATTACTCCCTCTATTCACAAATATAAGATGTTC
CAACTTTTTCTGAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None