barSeed - Barley Seed Development Database

Probe CUST_30000_PI390587928

Source Contig U35_6620

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30000_PI390587928	Hv_44K_v2	GTACACTTACCGAGTTTTGTAGAGTCAATACCCTTGGTTGTAACAAGTAACTAAAAATGT	1017	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.293	1.393	1.067	1.011	0.474	0.523
Raw	1439.620	2390.787	1605.833	2450.214	398.086	476.045

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58595.7	1177	2e-24	1005 - 1064	100	60 / 60	plus	ABC14670
MLOC	MLOC_58595.8	1037	2e-24	957 - 1016	100	60 / 60	plus	ABC14670
MLOC	MLOC_58595.6	1375	2e-24	1285 - 1344	100	60 / 60	plus	ABC14670
MLOC	MLOC_58595.1	1268	2e-24	1197 - 1256	100	60 / 60	plus	ABC14670
MLOC	MLOC_58595.3	1288	2e-24	1150 - 1209	100	60 / 60	plus	ABC14670
MLOC	MLOC_58595.4	1457	2e-24	1322 - 1381	100	60 / 60	plus	ABC14670
MLOC	MLOC_58595.5	1207	2e-24	1072 - 1131	100	60 / 60	plus	ABC14670
JLOC1	JLOC1_38088.2	1235	8e-25	1064 - 1123	100	60 / 60	plus
JLOC1	JLOC1_38088.1	1230	8e-25	1059 - 1118	100	60 / 60	plus
Harvest21	ABC14670	1105	3e-25	997 - 1056	100	60 / 60	plus	ABC14670
Harvest35	U35_6620	1126	3e-25	1018 - 1077	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_6620 1126 Hv_44K_v2
GTCCGACCCGGCCCGCTTCCCTGTTTGTTCTCCGTCCCCTCCCCTAGGACCGCCGGTCCG
CCGCCGGTTGCCAGACACATCGCCCGAGCGGCGCGGCGCATCCAGGACGACGAGCGCGAC
AGCGACTCCGCCGACCTAGCCAGTCGCCCATCCATGGATGCGCTCATGGCTAACTACGCA
TCCGGCTCTGACGATGACGACGACGACGATGAGCCGGCGACGGTCGCGGACGGCGCCTCG
GGGCCGCCGCAGGAAGCTTCCGCGCTGCTTCCTCCCCCTCCCCTCGACCTTCTCCAGTCC
CCGAACTTCGTAGATTACTCGACAATTCCACAGGGGAGTCGCATCCGGAGTTTCCCCCAT
GTGGAAGGCAACTACGCGCTGCATGTCTACATCCCTGTGGTCATTCCTTTCAACGCAAGG
AAACATCTGACCCTCGTTATGAGAAGAGTAGCATCACTTGTGCCAGATCTCTATGCTGTA
GATGCGGATTACGCACTTTCGGAGTTGTGCAAAGATGAGCAAAAACTTGAGAAAGTGCTT
CTCGGCAGGGAGTTCCATGTAAGCTTAGGAAGAACTGTTGGAATTCAGGTGCATCAAATT
GACTCCCTCGTCGCAATGCTTCGTCAGAAGTTTCAGTCACAACAGCGGTACTGGATGGAC
TTGAACAAATGGGAGCATTTTGTCAATGATGATTCTACACGATCATTTCTTTCACTAGAG
GTTACAAGAACTGGGTTACCAGAGATCAGTAAACAAATACATATGGTTGATGAAGTATAT
CGATTGCACGGTCTTCCTGAGTTTTACAAGAATCCCCGGCCACACATATCATTGGCGTGG
GCATTGGGTGATGTTAGCTCCAAACTGAAGCAGGCAACTAAGGAGATTGAAAAATTTGAA
AACAGCATCAACTTATCTAAAAACTATAATCTGAGGTGCAATTTCAGTCGTATATTGTGT
AAAGTAGGCAAGAAGGTCTACGATATCTGTAAAATTGGAGACTGAAACGACATTTTTGTA
CACTTACCGAGTTTTGTAGAGTCAATACCCTTGGTTGTAACAAGTAACTAAAAATGTTAT
GTGTTTCAGCAGCATTTATTGTTTAGAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_6620 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43480.1	282	4e-143	protein\|expressed protein
Brachypodium v1_2	Bradi3g50320.5	276	7e-149
Arabidopsis v10	AT5G51170.1	285	1e-84	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:20793906-20795330 REVERSE LENGTH=285