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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2_PI390715121Hv_44K_v2CAAGTAATGCTGCAAAACCTGTAAAAGCTGTGAAACAAAACAGCTTTAATTGCAGCATAT2695GeneList: None
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0720.3771.7031.9451.2081.220
Raw 59.654481.8811917.1203259.817727.837801.822



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36948527762e-242696 - 275510060 / 60plus None
JLOC1JLOC1_38605.127104e-232572 - 26319859 / 60plus
Harvest35U35_227774141e-23310 - 3699859 / 60plus



Contig Sequence (2794 bp)

>CslF9 2794 Hv_44K_v2
CGCGTCCGATCAGTTCACTGCTTGGCTGCTTGCTCCCCTACATCACTCTCTCACTCTCAC
TCACTCAGGGTGCAAGAACAGGCTCTGCTACTTGGTAGGCGGACCAAAGGTGGCATGGCT
TCTCCGGCGGCCGTCGGCGGGGGTCGTCTAGCCGACCCACTGCTGGCCGCCGACGTCGTC
GTCGTCGGCGCCAAAGACAAGTACTGGGTGCCCGCCGACGAGAGAGAGATCCTGGCGTCG
CAGAGCAGCGGCGGCGGTGAACAGGACGGCCGGGCACCGCTGCTATACCGCACGTTCAGG
GTCAAGGGCTTCTTCATCAACCTTTACAGGTTATTGACTCTGGTCAGAGTTATCGTGGTT
ATTCTATTCTTCACGTGGCGCATGAGGCACCGGGACTCGGACGCGATGTGGCTGTGGTGG
ATCTCGGTCGTGGGCGACCTCTGGTTCGGAGTCACCTGGCTGCTCAACCAGATCACCAAG
CTCAAGCCCAGGAAATGCGTCCCCAGCATCTCCGTCCTGAGAGAGCAGCTCGACCAGCCC
GACGGCGGCTCCGACCTGCCCCTTCTCGACGTGTTCATCAACACCGTCGACCCGGTGGAC
GAGCCGATGCTCTACACCATGAACTCCATCCTCTCCATCCTGGCCACCGACTACCCCGTC
CAGAAGTACGCCACCTATTTCTCCGATGACGGCGGGTCGCTGGTGCACTACGAGGGGCTG
CTGCTGACGGCGGAGTTCGCCGCGTCGTGGGTCCCGTTCTGCCGGAAGCATTGCGTCGAG
CCTCGCGCCCCGGAGAGCTACTTCTGGGCCAAGATGCGCGGGGAGTACGCCGGCAGCGCG
GCCAAGGAGTTCCTTGACGACCATCGGAGGATGCGCGCGGCGTATGAGGAGTTCAAGGCG
AGGCTGGACGGGCTTTCTGCCGTCATCGAGCAGCGGTCCGAGGCGTGCAACCGCGCTGCA
AACGAGAAAGAAGGGTGTGGGAACGCGACTTGGATGGCCGATGGGTCGACGCAATGGCAG
GGGACGTGGATCAAGCCGGCCAAGGGCCACCGGAAAGGACACCATCCTGCAATTCTTCAG
GTTATGCTGGATCAACCTAGCAAGGATCCTGAGCTGGGAATGGCGGCGAGCTCCGACCAC
CCTCTGGATTTCAGCGCCGTGGACGTGCGCCTCCCGATGCTGGTCTACATTGCCCGGGAG
AAGCGGCCTGGGTATGACCACCAGAAGAAGGCGGGCGCCATGAACGTGCAGCTGCGCGTG
TCCGCGCTGCTCTCCAACGCGCCCTTCATCATCAACTTCGACGGCGACCACTACATCAAC
AACTCGCAGGCCTTCCGCGCCGCCATGTGCTTCATGCTCGACCCGCGCGACGGCGCCGAC
ACCGCCTTCGTCCAGTTCCCGCAGCGCTTCGACGACGTCGACCCCACCGACCGCTACTGC
AACCACAACCGCATGTTCTTCGACGCCACCCTCCTCGGCCTCAACGGCATCCAGGGCCCC
TCCTTCGTCGGCACCGGATGCATGTTCCGCCGCGTCGCTCTCTACAGCGCCGACCCTCCA
CGGTGGCGGTCCGACGACGCCAAGGAGGCCAAGGCCTCGCACAGGCCCAACATGTTTGGC
AAGTCTACGTCCTTCATCAACTCAATGCCGGCGGCCGCCAACCAAGAACGGTCCGTCCCG
TCACCGGCGACAGTCGGCGAGGCGGAGCTCGCAGACGCGATGACTTGCGCGTACGAGGAC
GGCACCGAGTGGGGCAACGACGTTGGGTGGGTGTACAACATCGCGACGGAGGACGTGGTG
ACCGGCTTCCGGCTGCACCGGACGGGGTGGCGCTCCACGTACTGCGCCATGGAGCCCGAC
GCGTTCCGCGGCACGGCGCCCATCAACCTCACCGAGCGCCTGTACCAGATCCTGCGTTGG
TCGGGGGGATCCCTCGAGATGTTCTTCTCCCGCTTCTGCCCGCTCCTGGCCGGCCGCCGC
CTCCACCCCATGCAGCGCGTCGCCTACATCAACATGACCACCTACCCGGTCTCCACCTTC
TTCATCCTCATGTATTACTTCTACCCGGTCATGTGGCTCTTCCAGGGGGAGTTCTACATC
CAGAGGCCGTTCCAGACGTTCGCGCTCTTCGTCGTCGTCGTCATCGCCACGGTGGAGCTC
ATCGGCATGGTGGAGATCAGGTGGGCAGGCCTCACGCTGCTCGACTGGGTCCGCAACGAG
CAGTTCTACATCATCGGCACCACCGGCGTGTACCCGATGGCCATGCTGCACATCCTCCTC
AGGTCCCTCGGCATAAAGGGGGTGTCCTTCAAGCTGACGGCCAAGAAGCTCACGGGGGGC
GCCAGGGAGAGGCTCGCGGAGCTGTACGACGTGCAGTGGGTGCCGTTGCTGGTGCCCACC
GTGGTGGTCATGGCCGTGAACGTGGCCGCCATCGGCGCGGCGGCGGGCAAGGCGATCGTT
GGGCGGTGGTCGGCAGCGCAGGTCGCGGGGGCGGCGAGCGGGCTTGTTTTCAACGTGTGG
ATGCTGCTGCTGCTCTACCCGTTCGCGCTCGGGATAATGGGGCACTGGAGCAAGAGGCCC
TACATCCTGTTCCTTGTGCTGGTGACCGCGGTCGCTGCCACCGCGTCCGTGTACGTCGCA
CTCGCGGGGTCCTTGCTGTACTTGCATTCGGGGATAAAACTAGTTTAATTTTTGTCAAGT
AATGCTGCAAAACCTGTAAAAGCTGTGAAACAAAACAGCTTTAATTGCAGCATATAATAA
AGTTTACCTTGAAAAAAAAAAAAAAAAAAAAAAA



Homology of Contig CslF9 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g36630.18870.0protein|CSLF8 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed
Brachypodium v1_2Bradi3g45515.18720.0
Arabidopsis v10AT3G03050.111450.0| Symbols: CSLD3, KJK, ATCSLD3 | cellulose synthase-like D3 | chr3:687873-691629 FORWARD LENGTH=1145