barSeed - Barley Seed Development Database

Probe CUST_2_PI390587928

Source Contig U35_7869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2_PI390587928	Hv_44K_v2	TTATATCCATGGGAATTCTGAAGCTCCTAGGCCTGAAAGGAAGAAGCGAGCCATATGTGA	546	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.570	0.551	1.579	1.831	1.094	0.932
Raw	22.994	32.926	88.155	151.204	34.139	31.537

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371185	2381	2e-24	943 - 1002	100	60 / 60	plus	ABC16141
MLOC	MLOC_38004.1	2789	2e-24	529 - 588	100	60 / 60	plus	ABC16141
MLOC	MLOC_38004.2	2009	2e-24	527 - 586	100	60 / 60	plus	ABC16141
JLOC1	JLOC1_24669.1	2271	8e-25	532 - 591	100	60 / 60	plus
Harvest21	ABC16218	696	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_7869	696	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_7869 696 Hv_44K_v2
GGGCCTCCGCGGCGGGAGCTGGCGCGGGGGCGTCCACGGCGGTGGAGGCCGCCGATGTGG
TCGGTTGGGTGGCGCTGCGGCTCCGAGGAAGCTGGCCGACGGTGCTGCAGGTTCTGCAGC
TGCTCAGGGAGCAGGGCCTTGTCCTCGCCCTACTGCTCGGCCTCTCCGCCTTCTTCTCCA
TGGCCGAGACCGCCATCACCACGCTCTGGCCCTGGAAGGTTCGCGAGCTGGCCGATAAGG
AACCCGAGAACGGCGTTTTCAAAATGCTCCGGAACGATGTCACTCGCTTCCTCACAACCA
TACTCATCGGCACGACTGTGGTCAACATTGGCGCCACAGCAATTGTCACCGAGGCAGCCA
CGGCGATGTTTGGCGAAGCAGGTGTCAGTGCAGCTACAGGCGTCATGACTGTTGCCGTTC
TGCTTCTTACAGAAATCACGCCCAAAAGTGTTGCAGTCCACAATGCCACAGAAGTTGCCA
GGTTTGTGGTCAGGCCAATCGCTTGGCTTTCAATCATCCTCTATCCCGTTGGCCGGATTG
TTACAATTATATCCATGGGAATTCTGAAGCTCCTAGGCCTGAAAGGAAGAAGCGAGCCAT
ATGTGACTGAAGACGAACTGAAGCTAATGCTCCGGGGAGCGGAGCTGAGTGGTGCAATTG
CAGAAGACGAGCAGGACATGATTGAGAATGTACTCG

Homology of Contig U35_7869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g39640.2	680	1e-108	protein\|CBS domain containing protein, expressed
Brachypodium v1_2	Bradi1g15270.1	668	1e-113
Arabidopsis v10	AT1G55930.1	653	4e-103	CBS domain-containing protein / transporter associated domain-containing protein \| chr1:20918895-20922133 FORWARD LENGTH=653