barSeed - Barley Seed Development Database

Probe CUST_29999_PI390587928

Source Contig U35_6621

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29999_PI390587928	Hv_44K_v2	ATACTGACAGACATCTCTACTGCTACAAACTTGAATATCCAATCTTGCCTTGGTTTCAAA	990	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.464	1.622	1.153	0.882	0.538	0.563
Raw	308.186	505.693	335.532	385.416	85.844	96.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4943.2	4241	3e-21	14 - 71	98	57 / 58	minus	ABC15350
MLOC	MLOC_4943.1	4251	3e-21	17 - 74	98	57 / 58	minus	ABC15350
JLOC1	JLOC1_3143.1	4832	2e-21	10 - 67	98	57 / 58	minus
JLOC1	JLOC1_3146.1	4336	2e-21	4178 - 4235	98	57 / 58	plus
Harvest21	ABC15350	1064	3e-25	15 - 74	100	60 / 60	minus	ABC15350
Harvest35	U35_6621	1064	3e-25	991 - 1050	100	60 / 60	plus

Contig Sequence (1064 bp)

>U35_6621 1064 Hv_44K_v2
TGTTGCTCCTAGCGCAGAATACAAAGCAATATTTTCAGTCAACCCAAGGGCCAGCAATCC
AGACTTTTACTTAGGTGAACTTTGCCTGAACTGGTCAAGGGATTTAGTCCTTGGAGAGAA
TCAAGATAGCCGTGTTACCATGAAGCAAAGATTACCCGAGGTTCATATCGAGGAGCCACC
CCTTGTTGTGAGCATCGAGTGCCCTCCCTACGCCATCCTCGGGACCCCGTTCACTTTCTA
TGTGAAGATCCACAATTCAACATCCTTGCTCCAGGAAATCAAGTACTCTCTTGTTGATTC
CCAGAACTTTGTTTTCTCTGGGGCTCACAATCATGCCGCATTCATTCTGCCGAAAACCGA
GCATACCGTTAGTCACAAGCTTGTGCCGCTTGGTTCCGGTTCCCAGCAGCTGCCGAGGAT
AACGGTAACTTCGGTGAGGTACTCTGCTGCATTGACTCCTCCAACCTCTGCCACATCCGT
CTTTGTGTATCCCAGCGAGCCCAAATTCAATCTGGAAAAGAGCCACCCCATATCTGATGA
ATGCGTGAGCTAGATTTTCACAGACCGGGCAATCCACTCCCTTACACCCCCCTTTCAACC
GGGCTGTGGTGCTCAAGCAGAGTCGCCGCTGGAAAGAAAAGCCCATCGCTGATTCTGTCT
CACCTCCTTGCCCTACAGGCTTGAAGCGAAAATGATGTTGTCGAGTGGTGATCGGCACGG
CGCCGAAGTTTTGGCCTTGTTTTGAATATTGGTTTCTGTAGACCTTTTGTGTAGAGACCA
CATATGCCTGTAACATGTGATTATACTCCATTGTTTCTTGCTCACAAGGATAGTTGCACA
CAGTAGACATGGTGCATTGGTGCTGTATATGTAAATTAGGCCCCACCAGGCAAGTGGGGA
ATAAGTGAGCCCCATGTCTCTCGGTAGCAGAAGTTTTTTTTTTTGTCGACTTCTTCAGGT
TCATTGTTTGTGTAAAACTTGTGTTTAACCATACTGACAGACATCTCTACTGCTACAAAC
TTGAATATCCAATCTTGCCTTGGTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6621 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48380.1	1178	3e-94	protein\|expressed protein
Brachypodium v1_2	Bradi3g53280.1	1178	2e-105
Arabidopsis v10	None