barSeed - Barley Seed Development Database

Probe CUST_29994_PI390587928

Source Contig U35_6626

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29994_PI390587928	Hv_44K_v2	TTTCATGTGATGCTGGAACTTCACTACCAGGTGAGAGTGTTATTTGGTCCTGCTAAAAAA	1297	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.714	1.733	1.110	0.854	0.330	0.355
Raw	2224.200	3467.757	1973.317	2393.301	320.750	375.859

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14434.1	2334	9e-22	1 - 55	100	55 / 55	minus	ABC14341
JLOC1	JLOC1_9863.1	2360	5e-22	2280 - 2334	100	55 / 55	plus
Harvest35	U35_6626	1368	3e-25	1298 - 1357	100	60 / 60	plus

Contig Sequence (1368 bp)

>U35_6626 1368 Hv_44K_v2
GCGCAAGGTGATTGGTTGGTCGACCAAATTGCTGGTGTCAATGAGAGTTCTGGACTTGTA
TATTTTACTGGAACACTGGATGGACCATTGGAGACAAATCTGTACTGCACCAATCTCTTT
CCTGATTGTAGCCTTCCATTACAGGCCCCAAAGAGGTTGACTCGTGGAACTGGACGACAT
TCAGTAATTCTTGACCATCAGTTGCTAAGGTTTATTGATGTGTATGACTCAGTAAAATCA
CCACCTGTGATCCTGCTGTGTTCTTTGCTTGATGGAAGTGTACTAATGCCTCTGTATGAG
CAGCCACTAACAGTTCAGCCACTTAAAAAGTTTCAGCAGCTGGCTCCAGAGATGGTCCAG
TTTACAGGAAAGGATGGGACTTCATTTTATGGAACTCTCTATCTTCCCGATGAGAAGAAA
TATGGACCGCCTCCCTACAAAACACTTGTTAATGTTTATGGTGGTCCCAGTGTCCAGCTC
GTTAGTGATTCATGGATTAGCACTGTTGACATGAGGGCTCAGTATCTGCGAAGTAAGGGA
ATATTGGTCTGGAAGATGGACAACCGGGGATCTGCAAGACGAGGTTTGCATTTTGAGGGA
CAGCTTAAGTACAACATTGGCCGTGTCGATGCTGAGGATCAACTAGCTGGTACTGAGTGG
TTAATAAAGCAAGGCCTTGCGAAGCCTGGACATATTGGTTTGTATGGCTGGAGTTACGGT
GGTTTTCTATCAGCAATGTGCCTATCGAGGTTTCCCGACACGTTCTGCTGCGCCGTGTCT
GGTGCCCCAGTGACTGCATGGGACGGGTATGATACCTTCTACACAGAGAAGTACCTGGGA
CTGCCCTCGGAGCATAGCGATGCTTACGAGTACGGGTCAATCATGCACCATGTGAAGAAT
CTCAAGGGGAAGCTGCTCCTCATCCATGGGATGATTGACGAGAACGTGCATTTCAGGCAC
ACGGCTAGGCTCATCAACAGTTTGATGGCGGAACGCAAGTCGTACGAGATCCTCCTCTTC
CCTGATGAGAGGCACATGCCACGTCAGCTAGACGACCGGATCTATATGGAGGAGAGGATC
TGGGATTTTGTGGAGAGAAGCCTATGAAGTTGCGTTGTAGAGAAATCTGCCGTTGCCCTG
TGTAACTTAAACGTGGGATAGTTGGTATGGTATCGTGGACTTTATTCATTTCCCACCATC
TGTATTTATCCGCAAGTGCAGGGACATGCATGATTCTTGCCCGTGATAACGACCGTAATG
GTCAGCTGCTCTGGTTGCAGAGTGAATAATCCAATTTTTTCATGTGATGCTGGAACTTCA
CTACCAGGTGAGAGTGTTATTTGGTCCTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18850.1	597	0.0	protein\|OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed
Brachypodium v1_2	Bradi3g10630.1	797	0.0
Arabidopsis v10	AT5G24260.1	746	2e-173	prolyl oligopeptidase family protein \| chr5:8234865-8237810 REVERSE LENGTH=746