barSeed - Barley Seed Development Database

Probe CUST_29991_PI390587928

Source Contig U35_6629

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29991_PI390587928	Hv_44K_v2	GAATCACTTGATGATATTCTGAAGGAAATTCCTAAAGAAAGGAGGACTTACCTTTTCTCA	706	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359896	1793	2e-24	650 - 709	100	60 / 60	plus	ABC12717
MLOC	MLOC_5347.1	2181	2e-24	1416 - 1475	100	60 / 60	minus	ABC12717
JLOC1	JLOC1_3433.1	1950	8e-25	321 - 380	100	60 / 60	plus
Harvest21	ABC15295	755	3e-25	696 - 755	100	60 / 60	plus
Harvest35	U35_6629	766	3e-25	707 - 766	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_6629 766 Hv_44K_v2
GTGCGCCAAGTTCTGTCTCCCGTCACATAACCAGCAACCGCCGAGCGCCACGCCTAGCAG
ACCAACCCCACGCCGCCGCCGCATTCACCCACGCGCGCACAGAAGACTCCAGTCTTCTCC
TCTCCTCTCCTCTCCCCCCGTAGCCATGGCGGTGGTGGACAAGGCGGCCGCCGGGGGCGG
CGAGGCGCAGCAGCGGGAGCCGGAGCCGGCGGCCGAGGCGTCGACGTTCGCGGAGCTGGG
CATCTGCCGCGAGCTGGTGGAGGCCTGCGACGCCATGGGGTGGAAGCAGCCCACCAAGAT
CCAGGCGGGGGCCATCCCCCACGCCCTCCAAGGGAGGGACGTGATTGGGCTGGGGCAGAC
GGGGTCCGGGAAGACGGGCGCTTTCGCGCTGCCCATCATCCAGGCGCTGCTCGAGCACCG
CCAGCCCTTCTTCGCCTGCGTCATGTCGCCAACGAGGGAGCTAGCCATTCAGATTGCAGA
GCAGTTCGAGGCGCTAGGGTCAGGGATCGGCTTGGTTTGCTCAGTGCTTGTTGGAGGAGT
TGACCGGATGCAGCAAGTGTTATCCATTGCAAAACGTCCACATATTGTGGTTGGAACTCC
TGGCCGTCTTTTGGACCATTTGAAAGATACAAAAGGTTTTAGCCTAACCAAAGTGAAATA
CTTGGTACTTGATGAAGCTGATAAATTACTTAATTTGGAGTTCAAGGAATCACTTGATGA
TATTCTGAAGGAAATTCCTAAAGAAAGGAGGACTTACCTTTTCTCA

Homology of Contig U35_6629 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46610.2	469	3e-96	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g18920.1	450	3e-118
Arabidopsis v10	AT5G60990.1	456	2e-84	DEA(D/H)-box RNA helicase family protein \| chr5:24546601-24549148 REVERSE LENGTH=456