barSeed - Barley Seed Development Database

Probe CUST_29985_PI390587928

Source Contig U35_6635

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29985_PI390587928	Hv_44K_v2	AACAGAGAGAAGATGCGCATTGAAGCCTCGGGTGGTTATGTTTACGATGGATACCTGAAT	728	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.691	0.819	1.614	2.246	0.835	0.987
Raw	82.216	153.140	264.178	600.572	77.909	96.832

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13677.1	1335	2e-24	600 - 659	100	60 / 60	plus	None
MLOC	MLOC_13677.2	1573	2e-24	858 - 917	100	60 / 60	plus	None
JLOC1	JLOC1_9275.3	1125	8e-25	403 - 462	100	60 / 60	plus
JLOC1	JLOC1_9275.2	1493	8e-25	771 - 830	100	60 / 60	plus
JLOC1	JLOC1_9275.1	1246	8e-25	524 - 583	100	60 / 60	plus
Harvest21	ABC13356	931	3e-25	729 - 788	100	60 / 60	plus
Harvest35	U35_6635	932	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (932 bp)

>U35_6635 932 Hv_44K_v2
TACTGATCTACTGATGCTGGCGGCAGCGGCGCCGCTCCAAGTCCAAACCCTAACCCTAGC
ACTCTCCGACTCGATCCGAGGCCACGAGGCTCCCCGCGGCGGCGATGGAGGAGCTTAGGC
TCGGCAGCGGCGGCGGCGGCGGCGGCAGGGGTAAGCCGCCGATCCCGTCGTCAGCCTCGG
CGAGGAAGCCGGTGCTGTCACGGCACGCATCCTTTGTGAGGCCCCCTTTGAACAATACAA
AATCTGAAACTGAGAGAACTTTTGAAAGCACAGATGTTGAGTATACCCCAGTTGTACGGT
CTGGAGGCTGGGCCGATATTGGGTCAAGGAGCGCAATGGAGGATGTCTACATTTGCTGTG
ACAATTTCCTGCAAGATTTTGGACCTGAAAACTGTGAAGAAGGGCCCAGTTCGTTTTATG
GGGTTTTTGATGGGCATGGTGGAAAGCATGCTGCGGACTTTGTGTGCAGCAATTTGCCAA
GGTTCATCGTTGAGGGTGATGGTTTTCCGGGGGAGATAGAGAAAGCTGTCTCCTCAGCAT
TCTTACAGACTGATGCTGCTTTTGCAGATGCTTGCTCTGTGAACTCCTCTCTTGCATCTG
GCACGACTGCGCTTGCTGCACTCATAATTGGGAGGTCACTTCTGGTGGCAAATGCTGGCG
ATTGTAGAGCAGTTGTATGTTGCCGTGGAAAGGCGATTGAGATGTCCAGGGACCATAAGC
CATCTTGCAACAGAGAGAAGATGCGCATTGAAGCCTCGGGTGGTTATGTTTACGATGGAT
ACCTGAATGGGCTCCTGAATGTTGCTCGAGCAATCGGGGATTGGCACATGGAAGGAATGA
AAGCATGTGATGGTCTTGGGCCTCTTAGTGCGGAGCCAGAGGTGATGATGCGGAATCTTA
CCGAGGAGGACGAATTCCTGATCATCGGCTGC

Homology of Contig U35_6635 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g39600.1	368	5e-147	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi1g36920.1	360	5e-160
Arabidopsis v10	AT2G25620.1	392	3e-102	\| Symbols: AtDBP1, DBP1 \| DNA-binding protein phosphatase 1 \| chr2:10903154-10904978 REVERSE LENGTH=392