barSeed - Barley Seed Development Database

Probe CUST_29984_PI390587928

Source Contig U35_6636

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29984_PI390587928	Hv_44K_v2	AGATGTATATGTTTGAACTTGTAAGTGTACAAGGCAGGCCGAAGCAACGTCGAGGATTCC	1053	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.322	1.411	1.061	0.938	0.436	0.427
Raw	2082.047	3399.760	2299.120	3153.447	518.718	551.572

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251272.1	2122	2e-24	2042 - 2101	100	60 / 60	plus	ABC06262 ABC14991
Harvest35	U35_6636	1137	3e-25	1054 - 1113	100	60 / 60	plus

Contig Sequence (1137 bp)

>U35_6636 1137 Hv_44K_v2
TCTCGCTGTTGATGCTGCTTGTTGTATTATCTTATGTTCTGATTTTTCTTTTTGGAAATT
ACCAGGTTGAAGCTGTCACGGTCCATGCTAGTCAGAAGTATTTTGCAACTGTCTCCAGAG
ATAACACATGGTGCTTTTATGATATTTCAACAGGGTCTTGCCTCACACAGGTTGGCGAGG
CTTCTGGACAAGATGGATACACATCAGCAGCTTTCCACCCGGATGGTCTTATCCTTGGAA
CAGGCACATCAGAAGGTGTTATCAAAATTTGGGATGTAAAATCTCAGACAAGGGTTGCAA
AGTTTGAAGGGGAGGTAGGGCATGTTGGAACAGTGACTGCTATGTCCTTCTCAGAAAATG
GATATTTCCTAGCGACTGCAGCCCTTGACGGTGTGAAGCTTTGGGATCTACGAAAGTTGA
GGAATTTTAGGACCCTCTCTCCATTCGATCCAGATACACCAACAAGTTCTGTGGAATTCG
ACTTCAGTGGAAGTTATATCGCTGTTGCTGGTTCTGATATAAGGGTTTACCAAGTGGCCA
ATGTCAAGACGGAGTGGAATCTTGTCAAGACATTACCAGATTTATCCGGCACAGGGAAAG
TGACATCGGTCAAGTTCGGGGCAGATGCTAAGTATGTGGCCGTAGGCTCCATGGACCACA
ACCTACGCTTATTCGGGCTCCCTGGAGACGAACAGATGGAGGAGGCAAAACCAGAATCGG
CAGAGCAATGAGTAGACGTTGATACACGCCGCTGATTCTCATCACGGTTCCACAAGCATT
TTGCCTTTCGTGGTTTGGCCCCCTTCGCGCACCGTGTTGTCGAGGATGCATTTGAAAGAG
GAGTGTATGTAGCTGAACCTGAATGGAAGCAGTCCGCCTGGCGGTCCGAGCAGTTGATCA
AACCTGTGGGGCGAGCAACATGCTTTGGTAATCCGAGACGCCGTGCGGAATGTGTGAGAT
GCCAAAGTGTTTCTAGGGTTTTGGGTTTGAGCTTCACATTTTGGGGTGTGCGTGGAGACA
ACGCCCTAAGTTTTGGATTTATCATGTATAGGTAGATGTATATGTTTGAACTTGTAAGTG
TACAAGGCAGGCCGAAGCAACGTCGAGGATTCCGCCNNANAAAAAAAAAAAAAAAAA

Homology of Contig U35_6636 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32880.1	498	9e-125	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g75750.1	528	3e-133
Arabidopsis v10	AT2G33340.1	525	3e-96	\| Symbols: MAC3B \| MOS4-associated complex 3B \| chr2:14126584-14131000 REVERSE LENGTH=525