barSeed - Barley Seed Development Database

Probe CUST_29980_PI390587928

Source Contig U35_6640

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29980_PI390587928	Hv_44K_v2	AGCAGCGTCAGCGGCAACGCCGAGCTCATCAACATCAACATATGGCCCTTCTCCCGGAGC	555	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66065.1	2563	2e-24	1523 - 1582	100	60 / 60	plus	None
JLOC1	JLOC1_43521.1	2527	8e-25	1414 - 1473	100	60 / 60	plus
Harvest21	ABC19829	695	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_6640	696	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_6640 696 Hv_44K_v2
GCCGTTGCTGTCCTGCACATAGCTAGCTACCTAGCTTGCTTGCTCGTGCTCCACGTCCCG
TCCCAGCCCAGGCCGTGCTGCATTGCTCGGCGAGCGATGGACGTCGTCGTCGTCGGGCTG
GCGTCCCCCCCGCCCGAGTCCGGCCGCTCCTCGCCGTCGCCGACCGCGTCGCCCGAGTTC
GAGTTCTGGATGGTGGGCAAGAACCCGGGCTCCTTCCCCTCCCCCGCCCTGCTCACCGCC
GACCAGCTCTTCTCCGACGGCATTGTCCTCCCGCTCCACACCCTCCAGGCCCCTCCCGCT
GGCCCCGACGCCGACCAACACCAAGGCCAAGACCAAGCCGCCGTGGAAGACGCCGACCAA
GACCAAGATGCCGACGTCAACGAGCCCTCCGACCCGCCGGAGCAGGAAGGGGAGGCTGCC
GAGCAGGTCCAGCCGCTCGCGGAGGCCTGCGCCGTCCCGACGCCGGACCTCCCCGCCGTC
ACCTTCAAGTGGAAGGACATCTTCAAGGCCACCGGCGAATCCAAGGAGCGCGCCAAGAAG
GCGGAGCGCCGCGTCAGCAGCGTCAGCGGCAACGCCGAGCTCATCAACATCAACATATGG
CCCTTCTCCCGGAGCCGCTCCGCTGGCCACTCTACCTCCGGCGCCGGCGCCGGCGCTAGC
AGCAAGGCCAAGGCGACCAACCCCAGCAACGGCAAC

Homology of Contig U35_6640 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None