barSeed - Barley Seed Development Database

Probe CUST_29979_PI390587928

Source Contig U35_6641

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29979_PI390587928	Hv_44K_v2	AGTTCAGTAGCTTGCTTCCAAGGATGAAGAGATAATGCCGATGAACCAAAGGCTACTGCA	493	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48590.1	358	3e-21	39 - 98	97	58 / 60	minus	ABC20692
JLOC1	JLOC1_31190.1	360	2e-21	41 - 100	97	58 / 60	minus
Harvest21	ABC20692	934	3e-25	494 - 553	100	60 / 60	minus	ABC20692
Harvest35	U35_6641	1230	3e-25	494 - 553	100	60 / 60	minus

Contig Sequence (1230 bp)

>U35_6641 1230 Hv_44K_v2
TACAATCATCTCTATCTCTTCTCTAATGATGGTTGCCATCCTGGTGTCTTCAATGTAGAC
TCTAACACGCCAATTTTCTTTGCAGGATCTGGCTCTATGGTATAAGATGCAATAATGTGT
GATGCCTGGGTGGGAAAAGCACACACTTCTACTTAAAATATTAGTGGAAGCACCTTGTAT
TTGCTGGATTTGAGAATCTAAAACATTGCTCTTGTCTTGTCGGCCAACAAATGTTTCTGC
CTTGATGCCAGAAGTACGATGGATCACCAAAAACCTTGTCAGGAGAGACTTTAAGACAGT
CATCCTTTGCAGGACCATTTCTGGAGGAATGTTCCTTGTCTATGTTTACTCACATCTTCT
GTGCCATCAAAGTTATGCTGGGATCTCGAAAGCCCCACTCAGAATTCAAGAGTGGGAAAT
GACACCAAGCTGTTATAAACTTCATCATATTTTCTATCCCAACCCTCAGGCAAACTTAAG
CCCATTTCCAAGCTGCAGTAGCCTTTGGTTCATCGGCATTATCTCTTCATCCTTGGAAGC
AAGCTACTGAACTATTTCTTGTTCTACATCTTTTACAAACCCTTTGAAGATAGATGACGT
CACAAATGTTGAGATATCAACCATGGTATTTATATCACCCCACAAGGAGTCCATCTCATC
CACGAAGATTAACTCATTTTCCTTCCGAAGAAGTTCTATCCTGAATACTGGCATTTCCGT
TGGTGTCACTGAGTGGCAAACCCAAGCTCTGTTCCAGCCTGCATAGCGGCACTTCCGTTG
GTGCCACTGAGTCGAACATCCAAGCAGAATGGGAAGATACAAAATAAGGACATCAAAGCA
ACTGACTACAGCTGTAATTAGAACAAAATTCATCTAACAACTGCATGGAACATGTTATAC
CGAACTTCTAACACTCTACATGCTACATTGCTACTACATCTCACTTCATGTGGAGCAACT
GAACATAAGGACAGAAGCATCAGTACAGTCCAAATACTCTACATGCTACACCTGACTTCA
TGTGGAGCAACTGAACGAACGAGCTATGACATGAGACTGAGATTCAGAATCCACTGTAGC
TCAACTGTTAGTGTTGATCGTGTTAGTGATCAGACTCCGGTGTATCTCAGCCGATTCTAC
TCTACTCCAATGGGGATACTCATCATGTAACTGCTGACGGGATTAGTATTATTAATACTG
AAAGATTTGTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6641 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None