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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29977_PI390587928Hv_44K_v2GTTTACATTTTTCAGGCTGCCCTTCTGTCGAATGAAAATAGTGTTCGGTCATCCAAAAAA872GeneList: thistle2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1221.8255.6943.2160.8340.739
Raw 17.433413.6521039.847975.14183.21682.301



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_60948.110529e-2218 - 7210055 / 55minus ABC14215
JLOC1JLOC1_39779.110475e-22878 - 93210055 / 55plus
Harvest21ABC142155193e-2512 - 7110060 / 60minusABC14215
Harvest35U35_66439433e-25873 - 93210060 / 60plus



Contig Sequence (943 bp)

>U35_6643 943 Hv_44K_v2
GAGACCGTCGTCCAACTTTGAAAGTCAGGAGGTAGCTAAGCTAAGCTGAGGGCTAAGTGA
AAATGGTGTCCGTCAGCTTCAAGATCCACGGAGCCGGGGTGACAACCGTTGCAGTGCTCC
TCCTTGGCTCCCTCCTTCTCTTTTCCGATGCGTCCATGGACGAGCCGGCTGCTTACAAGC
ACGTCGCTCCAGCTCCGTCGCCCTTGTCCTACCCCCCGACGCCGGCACCATCCAAGCCGA
TCCACCCGGTGATCATCGTCCAGGGCATCGTCTACTGCAAGTCCTGCAAGCTCCGCGGCT
ACAACGCCGGCATGGACGCCTCGCCTCTCCCCAACGCGACGGCGAAGTTGGTGTGCTACG
GGAGCAAGGGAGGGTACAGGGTGCTGAACATGACGAGCACGGCGACGGACGAGAACGGCT
ACTTCCTGGCCATGGTGTACGACCTGGCCATGTTCAGCCGGCGCAGCTGCCGGGTGTACC
TCCGCACCTCGCCCACGCCGCTCTGCGACGCGCCCTTCCTCCCGGCCGACGCCTCGCTGG
GGATCGTCCTCAAGAGGGAGGAGGTGAAGCCGTCGTCGCCGGAGGGCGTGCGCGGCGTCT
ACAGCGCCAGGACCGCGCTCATGTACGCGCCGCGCAAGGGCGCCAAGTGCCCGGCCTACT
ACTGATGAGCGAGGACGGACACGCACGTACGTCGGGAGATGGACAAGTGTTGTGAGATCG
ACGCCGTGGTATGGTATGCAGCGAACGTAGTCGGAGGCAATAAAAAGCAGAGACTGTTTG
TCGTCGCGTAGGTCTGGGTCGTTTTAGTTTGTAATCCATCGGGTACTGCTTGTGGTTTCA
AGTTGAAGTCGTTTCCATGTTGATCTGTGTAGGTTTACATTTTTCAGGCTGCCCTTCTGT
CGAATGAAAATAGTGTTCGGTCATCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_6643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os05g45460.11965e-55protein|POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed
Brachypodium v1_2None
Arabidopsis v10None