barSeed - Barley Seed Development Database

Probe CUST_29976_PI390587928

Source Contig U35_6644

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29976_PI390587928	Hv_44K_v2	TGTTGTAACCGCGTCGTGTAATGTGATTGTAAGCAATACAAGTACAACTGGTCCGTGCGT	1038	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.302	1.406	1.097	0.901	0.338	0.441
Raw	1166.397	1949.582	1349.891	1748.834	232.667	325.340

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376183	1481	2e-24	1362 - 1421	100	60 / 60	plus	ABC13539
MLOC	MLOC_65441.1	462	2e-24	51 - 110	100	60 / 60	minus	ABC13539
MLOC	MLOC_65440.3	2941	2e-24	2440 - 2499	100	60 / 60	minus	ABC13539
JLOC1	JLOC1_43065.1	687	8e-25	493 - 552	100	60 / 60	plus
Harvest21	ABC13539	1127	3e-25	1039 - 1098	100	60 / 60	plus	ABC13539
Harvest35	U35_6644	1127	3e-25	1039 - 1098	100	60 / 60	plus

Contig Sequence (1127 bp)

>U35_6644 1127 Hv_44K_v2
GAAAAGATGAAGCGCAACAGCAAAATCGGAAAAGAAATCGTTGCTGCCATCAAGAAGGGT
GGCCCAAGTCCTTCATCCAACACAGCTTTAGCAGCGCTACTAGAGAAAGTAAGAGAGCTT
GATGTCCCCAAGGAAGTTGTTGAGCGTAATATCAAAAGAGCTTCAGAAAAGGGTCAGGAT
ACTTACACAGAAAAAAATTATGAGGTCTATGGTTTTGGTGGAGTAGGTATGGTCGTTGAG
GTCCTTACAGACAAAATTACAAGATCTATTGCGGATATTAGAAATGTTGTAAAAGACTGT
GGAGCAAAATTGGCTGATCCTGGGTCTGTTACATTCAGATTCAGACAAGCTCGAGTGGTT
AACATAAAAGTTACAGATGCCGATAAGGACCAACTACTGTCTGTTGCTTTGGATGCTGGT
GCCGATGATGTTATTGAACCAAATTTTGATGATGAAGATGACTCTGAAGAGGAGGTTCTA
GAGAGGTTTTACAAGATAGTTACTACATCTGAAAACTATCCTGTTGTGCTATCAAAGCTA
CAAGAGGAAGGGCTGAAATTTGAAACGGATAACGGTTATGAACTGCTGCCTCTCAATCCG
ATTGAGGTGGATGACGAGGCCATGGAACTAAACAAGGACCTTGTATGTAAGTTGCTTGAA
TTGGATGACGTTGATGCTGTCTACACAGACCAAAAGTGAGTCAATTTGGAACCCGCAGGC
TCTCTCAACTCTCAAGACGCTACTCGATGACTACATTTGTGCAGGGCTTGTTTACAACTT
CGCGTCCATTACGGATTTCTTATCAGCACTGTTTGCGCCGATTACAAAGTGTGCACCCTT
AAACACCATCAGCTTCAAGTATCCAGAATGAAAACTGCCGAACTCGGCATTTTTCCTTTT
TTATTTTGGGCGGGCAGGGGGGGGGGGGTACTTTTCCTACCATCTCGTACTGAGAGTTTT
ACCTTACGTTTGGTGTCCCTTGATCTCTTCACGTCGCGCTAGTCTCAGTGAGTTGCTACA
CGCTGCTCGTATAACGAATGTTGTAACCGCGTCGTGTAATGTGATTGTAAGCAATACAAG
TACAACTGGTCCGTGCGTGCGTGGGTTTNTCGACGGAAGCAAAGAAA

Homology of Contig U35_6644 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g44350.1	318	2e-138	protein\|conserved uncharacterized protein, putative, expressed
Brachypodium v1_2	Bradi2g19530.1	308	1e-140
Arabidopsis v10	AT2G25830.1	331	2e-102	YebC-related \| chr2:11019091-11021665 REVERSE LENGTH=331