barSeed - Barley Seed Development Database

Probe CUST_29967_PI390587928

Source Contig U35_6653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29967_PI390587928	Hv_44K_v2	TACGTTCAAATCTTCCATTAAAGAAAGAAACAGAGATGCCTGTGCTGTTTTGCTTTTCGA	1077	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.572	2.304	1.273	0.774	0.449	0.617
Raw	695.832	971.112	479.512	436.841	92.782	137.449

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10055.2	3182	2e-24	2791 - 2850	100	60 / 60	plus	ABC14607
MLOC	AK359819	2999	7e-23	2766 - 2822	100	57 / 57	plus	ABC14607
JLOC1	JLOC1_6556.1	3015	8e-25	2791 - 2850	100	60 / 60	plus
Harvest21	ABC14607	1153	3e-25	1078 - 1137	100	60 / 60	plus	ABC14607
Harvest35	U35_6653	1153	3e-25	1078 - 1137	100	60 / 60	plus

Contig Sequence (1153 bp)

>U35_6653 1153 Hv_44K_v2
AAACTTCACTCCTCCAGCAACATTACATTCCAGGCCTCCTGGTGGCCCCCAGTCTTTTCC
TTCAGTTTCATCTCATGGTCCCACGTTGGTGCAAGTACTATCATCTCCTGTTGGGGCGCC
ACCGCCGCAAACTTACCCACCATCGATGCAAATGCGTCCTCCCATGTCAACACCTCCTCA
AATGAGAGGCACACTTTCACCTTTCCCTCAAGCTGGACCAACACCTGGCAATGCACAAGT
GGCACCTTCATCGCGCCCACCTGCTGGTATGCACGGGTTGTCTTTCTCAAGTTCAGCAAA
CACAGGCTACAATCAGACATCAATAGCTGCTTTCAGACCTCCACGTCCAGCCACAGGTGA
TTTTACCTTTAGGCCTCACGTGCCACCTTCGGCTGAACATACAGCTTCAGCGGGCCAAAT
GGGAGCTCAAGCTAACTCTCCATTTGGTTTACCCCAAGCATCGCCGTTCCGTCCTGCCAA
TCATGGCCCCATTTCCCCAGTTCAAGGTTTCCAAAGGCCTCCAGATGGAAGTCATATGAG
TCAGGCTCGGATGCATGCTCCACCTCCACACTTCCACGGAACCTTCCGTGGGAATCCACC
TGCTCATGAATCACATAACGGGTTTCGACCATTCCCTCCAGCAAATCCATCAAACAGAAT
GCCGTTTCATTTCTTGCCACCACAGCAGAATCCATTTCCTAATGCAAACGGGCAAGGTGG
CAATCCAGGTGGCCCAAATCCGATATACGATCCTTTTGCTCCCACATCAGTGTCAGGGGG
GAGGAAAGAAGGCGGCGGCTGACCCTGTCTACTGAGAATCTCATGCAGTCGGTTGGCTCG
GAAGGAGGAGACGTTGATAACATGTCTGTCCTGGAATCAAAGTTGCAATACGAAGGGAGT
TGAGCCTTGAGTGGTCGAGGTGCTTAACTTGTACCATTGCTCTCCCCCTTTTTGTTTTGA
CAGAAGCACACCGTGTCGAAGGAGACATTTCTTGCATTTGCGGCTATTTGTTTTTGTTTT
TTTTTTTGAAAAGGAGGATATACCCTGGCCTTTGCATCTCGACGATGCGGCTATTTGTAC
GTTCAAATCTTCCATTAAAGAAAGAAACAGAGATGCCTGTGCTGTTTTGCTTTTCGAAAA
AAAAAAAAAAAAA

Homology of Contig U35_6653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g12880.1	722	2e-106
Arabidopsis v10	None