barSeed - Barley Seed Development Database

Probe CUST_29964_PI390587928

Source Contig U35_6656

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29964_PI390587928	Hv_44K_v2	ATTGACAGAGACTTTGTGATAGGCCAGTTTCTGAAATGCAGCATAATTCAGATTCTTAAA	521	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71308.2	958	6e-24	804 - 862	100	59 / 59	plus	ABC17717
JLOC1	JLOC1_47387.1	1526	3e-24	816 - 874	100	59 / 59	plus
Harvest21	ABC17717	593	2e-22	522 - 576	100	55 / 55	plus	ABC17717
Harvest35	U35_6656	593	3e-25	522 - 581	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_6656 593 Hv_44K_v2
GTTGCTGACAGAAGGCCTACTATGGGTCAGGCCGTTCGTATGCTCGAAGCAGAGGATGTG
CTATCGCGGGAGGAACGGAGGAAGAGCCGGCTGGCGCATGTCGATGGTGGAGACACCTGA
CCTGGGTTAGCAGTCCAAGTCGAGGTCGTGTGTGTTGAAATCGCTTGCGGTAAGAAAGAT
CATCTGGCCATCTGGGATGCAAAGTGTGAATAAAGCTTTCGCTGGAAAAAGAGAAGATCA
AATAAGCCTTCTGCTTATGATTATACTGGATGGTAGATTACTATGATGGGAATTCACATT
CCACAAGAGTAATTCCTGATCGCGACTCTGAACTTCCAAAAGTCGCCGGAAGAGAATGGC
ATGATTTACATTTAAGACTTCAGAGCACAGCATTTGAATTTTCGAAATGTACAGCAAGTA
GGCTGATAGCACTGGGCGAGGACTTGTTTGCCAATACATTTGTATTTATCTATTTTTTTG
GAACACAGTTGATCAAGTCACTTAGTGTGTACAGACCACAGATTGACAGAGACTTTGTGA
TAGGCCAGTTTCTGAAATGCAGCATAATTCAGATTCTTAAAAAAAAAAAAAAA

Homology of Contig U35_6656 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None