barSeed - Barley Seed Development Database

Probe CUST_29952_PI390587928

Source Contig U35_6668

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29952_PI390587928	Hv_44K_v2	CCGGTGGAATATGATGTTGTATAACTTGAGCCTCGTGGGTATATATATATGAGTGCATGA	859	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.105	3.519	1.127	0.831	0.687	0.612
Raw	40.913	56.513	15.761	18.201	2.691	3.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368229	1293	2e-24	1222 - 1281	100	60 / 60	plus	ABC16116
Harvest35	U35_6668	938	3e-25	860 - 919	100	60 / 60	plus

Contig Sequence (938 bp)

>U35_6668 938 Hv_44K_v2
GTGAAGCTTTTGGTACGGCGGAGCTCGGCCGCGGTGGCTCGGTCCTCTCCGGTACGACTA
CCCGGAGCACCTGGCCGGAGAGTTCCCGGGCGATTACGGGTTCGATATAGCAGGCCTGGG
CCGGGACCCCGTTGCTTTCGCCAACTACTTTAACTTTGAGATCTTACATTGTCGATGGGC
CATGCTTGCTGCTCTTGGTGTTGTTGTTCCTGAGTTGTTAGATCTATTTGGGATAGTGCA
TTTTGTTGAGCCTGTCTGGTGGAAAGTTGGTTATGCCAAACTTCAGGGTGATACTCTTGA
TTACCTTGGGATTCCTGGGTTCCGAATTGCTGGTGGTCAAGGCATCATCGTCATCGCTAT
CTGTCAAGTCCTTTTGATGGTTGGGCCAGAATATGCGAGATACTGTGGGATCGAGGCGCT
AGAACCCTTGGGAATATATCTTCCTGGGGACATAAACTACCCAGGTGGAGCACTGTTCGA
TCCATTGGGGCTGTCCAAAGACCCTGTTGCGTTCGAAGAACTCAAGGTGAAGGAGATAAA
AAATGGTCGTCTAGCAATGGTTGCATGGATCGGATTCTACATCCAGGCGGCTGTAACCGG
CAAGGGCCCTGTGCAGAACCTCGCCGAGCACTTGTCGGATCCACTCCACAACAACATTTT
ATCCCCCTTTCTTTGAGACATTTCAACTGCTTATGTACAGCGTTTACATTTATCAGTTTG
TAGCTGCTAGGAAATTTCTATAGTTAGCAAATAGGTACTGCGTACACATGGCTATAAGAT
TCTTGTATAGTTGTGGAGTTATGGTGTTGCAAAAATTGTGGGTGTCCCAACATTATTGAT
GTTAGAAGGGAGAGAGAGACCGGTGGAATATGATGTTGTATAACTTGAGCCTCGTGGGTA
TATATATATGAGTGCATGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g12540.1	322	2e-142	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g27480.1	319	2e-144
Arabidopsis v10	AT1G76570.1	327	7e-120	Chlorophyll A-B binding family protein \| chr1:28729132-28730754 FORWARD LENGTH=327