barSeed - Barley Seed Development Database

Probe CUST_2994_PI390587928

Source Contig U35_11308

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2994_PI390587928	Hv_44K_v2	TATTGCTCCTTGACAAACAGTTTAGGATTGGTCGGTCGGTTTAGGTGGGGTTGACAAACA	769	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.928	1.714	0.965	0.933	0.457	0.478
Raw	706.064	994.725	483.276	746.544	128.397	143.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76202.1	834	7e-23	680 - 739	98	59 / 60	plus	None
JLOC1	JLOC1_50813.1	638	4e-23	390 - 449	98	59 / 60	plus
Harvest35	U35_11308	887	3e-25	770 - 829	100	60 / 60	plus

Contig Sequence (887 bp)

>U35_11308 887 Hv_44K_v2
GCTGATTTGTCATCTCTTGCTTTGGGAAAGATTTGACAACGTTGGGTTTGAATTTGAATT
ACCAGACAATCTGACAAGACATTTGGCTCTCCATTTTCAAATGAACCAGCAAAAGGGGAT
CCCGAATATACTACTCCAGCTTGCTATGTGGCTGAGCAACCCCCAGCACTACAGCCTATG
CATTTTCAGAAGTTTCAGACGCTCATACTGTTTTACATATTCTACAGCATGCCGAAGGAT
GAAGCTCAAATATGTGCTGCCAATGAACTATATAATCGTGGATGGTTTTACCATAAAGAA
GCACGACAATGGTTCACAAGAATTCCTAACATGGAGCCTCTTGTCAAAACTCCTTCATAT
GAACGGGGCTCTTATGCCTTCTTTGATCAAGGCAACTGGGAGACAGTCCGTAAGGATAAC
TTTGTTCTTCATTATGAGCTAGTAGAGAAAAGACCAAGTCTTCCTTCCGCGTCCCAAATT
GTTAGGTGAAATTTTTCTGGGGCCAGGCTATATATGTAGGTGAGTGAATGAGAAAATCAG
TCATGTCGATATGCGGAGAGGAGGAGGTGGCTGCAGATGGAAGAGGAAAAAAAAGGTGGC
GGTGTTTGTAATTATACTGTACTCCCTCTGTAAAGACGCTCTTATATTTCTTTACGGAGG
GAGTAGTTGTTAGGAGGAAAATTAAAGGATAGATGGTACTGCTGGCATTAAACTTTGGGT
TACATTACAAAATAGCTGCTTCTTCTTTTACATGATGATGGGGAGTCTCTATTGCTCCTT
GACAAACAGTTTAGGATTGGTCGGTCGGTTTAGGTGGGGTTGACAAACAGTCTAGCCCAC
CTGCCCTTGGTTATAGGATGGATGGTTTATAAAAAAAAAAAAAAAAA

Homology of Contig U35_11308 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g54120.4	623	2e-71	protein\|CCR4-NOT transcription factor, putative, expressed
Brachypodium v1_2	Bradi5g25870.1	623	4e-68
Arabidopsis v10	AT1G07705.2	614	3e-52	NOT2 / NOT3 / NOT5 family \| chr1:2382090-2385856 FORWARD LENGTH=614