barSeed - Barley Seed Development Database

Probe CUST_29949_PI390587928

Source Contig U35_6671

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29949_PI390587928	Hv_44K_v2	GAAAAAGAATCCAGCTACACCTGAACTATGGCTTGCAGCAATTCGAGCTGAATTGAGGCA	2497	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.182	1.006	1.246	1.135	0.552	0.452
Raw	161.165	199.718	234.807	338.111	57.264	51.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369516	3408	2e-24	2446 - 2505	100	60 / 60	plus	ABC19280 ABC38826
MLOC	MLOC_81960.1	3225	2e-24	1058 - 1117	100	60 / 60	minus	ABC19280 ABC38826
MLOC	MLOC_81960.2	2714	2e-24	546 - 605	100	60 / 60	minus	ABC19280 ABC38826
MLOC	MLOC_81960.4	2335	2e-24	348 - 407	100	60 / 60	minus	ABC38826
MLOC	MLOC_81960.5	2238	2e-24	311 - 370	100	60 / 60	minus	ABC38826
MLOC	MLOC_81960.3	2413	2e-24	465 - 524	100	60 / 60	minus	ABC19280 ABC38826
JLOC1	JLOC1_54513.2	2538	8e-25	1869 - 1928	100	60 / 60	plus
JLOC1	JLOC1_54513.1	2508	8e-25	1839 - 1898	100	60 / 60	plus
JLOC1	JLOC1_54514.1	2812	8e-25	642 - 701	100	60 / 60	minus
Harvest35	U35_6671	2577	3e-25	2498 - 2557	100	60 / 60	plus

Contig Sequence (2577 bp)

>U35_6671 2577 Hv_44K_v2
ATTTAGGAAGGGAGGGAGTATGCTATTCCTTTCAAAAAAAGAAAAAAAAAAGAGAGAGAG
AAGAGAAATCTTCCCCGACCCAAACCCATCTGCTCCACCGCCGCCTCTCTGCTCCTCCCC
TCCCCTCCCCTCCCCTCCCCCCAGATCGCCCCGTCCTCCTCGGCGACATGAGCGGTCCCG
CCCCGACCCCGCCGCCGCCCCCTCCTCCGGCGGCGGCGCCCGCCCGCCCCGTGCGCTACG
ACTTCCTCAACTCCAAGCCGCCCCCCAACTACGTCGCGGGTCTCGGCCGTGGCGCCACCG
GCTTCACCACCCGTTCCGATATCGGGCCGGCCCGCGCTGCCCCGGACCTCCCAGATCGCT
CCGCCGCCGCGGCTGCTCCTCCCGCTGTCGGCCGCGGCCGCGGGAAGCCCCCAGGCGAGG
ACGAAGGCGGAGATGAAGGCGGCGACGAGGAGAAGGGATACGACGAGAACCAGAAGTTTG
ACGAGTTCGAGGGCAACGACGCCGGCCTCTTCTCCAACGCCGACTACGACGATGATGACC
GCGAGGCTGATGCTGTCTGGGAGAGCATCGACCAGAGGATGGACCTGCGCCGCAAGGATC
GGCGCGAGGCGCGCCTCAAGCAGGAGATTGAGAAGTACCGTGCGTCCAACCCCAAGATCA
CAGAGCAGTTTGCTGATCTCAAGAGGAAACTGGCCGATGTGTCAGTGCAGGAGTGGGAAA
GCATACCTGAAATTGGGGACTACTCGGCTCGCAACAAGAAGAAGCGGTTCGAGAGCTTTG
TCCCGGTGCCGGACACTCTGCTTGAGAAGGCCCGGCAGGAGCAGGAGCATGTCACAGCAC
TGGACCCCAAGAGCCGTGCCGCTGGTGGCACAGAGACACCATGGGCGCAAACACCGGTTA
CTGACCTGACAGCCGTGGGTGAGGGTCGTGGTACCGTGCTTTCGCTGAAACTGGACAGGC
TATCGGATTCAGTTTCTGGGCTTACTGTTGTTGATCCAAAGGGATACCTTACAGACTTGA
AAAGCATGAAAATTACTAGCGATGCTGAGATCTCTGATATTAAGAAGGCGAGACTGCTGC
TCAGGTCTGTGACACAGACAAACCCGAAGCATCCTCCAGGTTGGATTGCTGCTGCTAGGC
TTGAAGAGGTTGCTGGCAAGCTCCAGTCTGCTCGGCAGCTCATTCAGAGGGGCTGTGAGG
AGTGCCCCAAGAATGAGGATGTTTGGTTCGAGGCATGCCGGTTGGCTAGTCCAGATGAGT
CAAAGGCAGTAATTGCCAGGGGTGTGAAGGCAATTCCCAACTCTGTGAAGCTGTGGCTGC
AGGCTGCAAAACTAGAGACCAGTGATTTGAACAAGAGCAGGGTTTTAAGGAAGGGGCTGG
AGCACATTCCTGATTCAGTTAGGTTGTGGAAGGCTGTTGTGGAGCTGGCGAACGAGGAGG
ATGCACGGATGTTGCTTCACAGGGCTGTGGAGTGCTGCCCACTTCATGTCGAGCTGTGGC
TTGCCCTAGCAAGGCTCGAGACGTATGACCAGGCAAAGAAGGTTCTTAACAAGGCCAGGG
AGAAGCTCAACAAGGAACCTGCCATTTGGATTACAGCTGCAAAGCTGGAGGAGGCTAATG
GGAACACCCAATCTGTAAGCAAGGTGATTGAGAGAGGTATAAGATCTTTGCAGAGAGAAG
GGTTGGATATTGATAGGGAGGCATGGTTAAAGGAAGCCGAAGCTGCAGAGCGTGCTGGAT
CTGTGCTTACTTGCCAGGCTATTGTGAAGAGCACTATTGGAGTTGGGGTTGATGACGAGG
ACCGGAAGCGAACATGGGTTGCTGATGCTGAGGAATGCAAGAAACGTGGTTCGATTGAGA
CAGCTCGGGCCATCTATGCACATGCTCTTAGCGTGTTCGTTGCCAAAAAGAGTATATGGC
TTAAAGCGGCGCAGCTTGAGAAGAGCCATGGTACAAGAGAATCTCTTGAAGCCATTCTCA
GAAAGGCTGTCACGTACAATCCAAAAGCTGAAGTGTTATGGCTTATGGGTGCAAAGGAGA
AATGGCTGGCTGGTGATGTCCCTGCAGCTAGGGCCATCCTTCAGGAAGCTTATGCTGCCA
TCCCTATTTCCGAGGAGATCTGGTTAGCTGCATTTAAGTTAGAGTTCGAGAACAACGAAC
CGGAGAGAGCAAGAATGCTTTTGACCAAGGCCAGGGAAAGAGGAGGCACCGAGAGGGTTT
GGATGAAATCAGCAATTGTTGAGAGGGAATTAGGAAATGTGAATGAGGAAAGGAGGTTAT
TGGAGGAAGGTCTGAAGTTATTCCCCTCCTTTTTCAAATTGTGGTTAATGCTTGGACAGA
TGGAAGACCGGATTGGGCACGTACCGAAGGCAAAGGAGGTTTACGAGAATGGACTCAAGC
ACTGCCCCGGTTGCATTCCTCTTTGGCTCTCACTAGCTAGTCTAGAGGAGAGGATAAATG
GCTTGAGTAAGTCACGCGCTTTCCTCACCATGGCAAGGAAAAAGAATCCAGCTACACCTG
AACTATGGCTTGCAGCAATTCGAGCTGAATTGAGGCACGGGAACAAAAAGGAAGCTG

Homology of Contig U35_6671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g35550.1	1040	protein\|pre-mRNA-processing factor 6, putative, expressed
Brachypodium v1_2	Bradi3g29980.1	961
Arabidopsis v10	AT4G03430.1	1029	\| Symbols: STA1, EMB2770 \| pre-mRNA splicing factor-related \| chr4:1517411-1520500 REVERSE LENGTH=1029