barSeed - Barley Seed Development Database

Probe CUST_29947_PI390587928

Source Contig U35_6673

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29947_PI390587928	Hv_44K_v2	ATTCCGAAGCTGGGGAGAGTGTTAACTTGTTCCTGCGGTCAATTGGTCTTCGAGAATATT	1079	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363503	2977	2e-24	1473 - 1532	100	60 / 60	plus	ABC14562 ABC26678 ABC38182
MLOC	MLOC_8289.2	2488	2e-24	1488 - 1547	100	60 / 60	plus	ABC14562 ABC26678
MLOC	MLOC_8289.1	2849	2e-24	1835 - 1894	100	60 / 60	plus	ABC14562 ABC26678
JLOC1	JLOC1_5501.2	2807	8e-25	1504 - 1563	100	60 / 60	plus
JLOC1	JLOC1_5501.1	2880	8e-25	1577 - 1636	100	60 / 60	plus
Harvest35	U35_6673	1144	3e-25	1080 - 1139	100	60 / 60	plus

Contig Sequence (1144 bp)

>U35_6673 1144 Hv_44K_v2
CGAATCTTGTCGCCCACGGGCGTGATCGCCTCCCCGCCCACCGCCCATCATCAAGATCCA
GCGTCTGTTCGCCCCTTTGATCCCGACTCGCTGCAACTTGCCGTCCTCCCGCGGGTGGTT
TATCGGGGACGCGCACACGGCGTGCTCGACGTAATGCTCGCCAGAGCCTTTCGCCACCGG
TGAGCTAGCTCGCTGGCTGGCTAGCTTTTCTTGGGCCGGGTCATGGTGGGTTGATTGAGC
GTCCACGACGATGCCCGGCTCGGAGAGGACCGTTGTGTGGTTCAGGAAGGACCTCAGGAT
CGACGACAACCCGGCTTTGGCCGCCGCCGCAAGGGACGGCGCGGTGCTCCCTGTCTTCAT
ATGGTGCCCGGCCGAGGAAGGCCGCTTCTACCCCGGCCGCTGCTCCCGGTGGTGGCTCAA
GGAGTCGCTTGCCCACCTTGCCAAGTCGCTCGAGGCGCTCGGCTGCCCGCTCGTGCTCAT
CCGAGCTCAGACTACTCTTGACGCGCTTCTGCAGTGCGTCCATTCCATCCGCGCCACCAG
AGTGGTCTATAATCATCTATACGACCCTATTTCACTTGTGCGGGATGACAAAATCAAGAA
TGAGCTTTTGGGCCTTGGAATTTCTATGCAGAGTTTCAATGGTGATCTGCTATATGAGCC
ATGGGAAATTTATGATGAGAATGGGCTTGCATTTACAACTTTCAATATGTATTGGGAAAA
ATGCATGGAATTGCCTATCGAAATATCACCATCCCTTGCCCCTTGGAGGTTGGTGCCTGT
CTCAGGTATAGAAAACCTTTGTACTAGTTCAATTGATAACCTAGGTCTTGAATCAAGTAA
GGATGAGGAATCAAGCAATGCTTTGCTAAGCAGGGCTTGGTCTCCTGGCTGGCGCAATGC
GGAGAAGACACTTGAGGATTTCGTGTGTCATGGTCTCCTAGATTATTCAAAAGACGGAAT
GAAGGTTGCAGGAACTACAACATCGTTACTGTCACCATATCTTCATTATGGTGAGGTGAG
TGTAAGGAAAATCTATCAACTTGTCAGGATGCAACAGATCAAGTGTGGAAATGAGGGGAA
TTCCGAAGCTGGGGAGAGTGTTAACTTGTTCCTGCGGTCAATTGGTCTTCGAGAATATTC
ACGT

Homology of Contig U35_6673 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41550.2	652	2e-173	protein\|FAD binding domain of DNA photolyase domain containing protein, expressed
Brachypodium v1_2	Bradi3g49204.1	637	8e-178
Arabidopsis v10	AT1G04400.2	612	2e-119	\| Symbols: CRY2, FHA, AT-PHH1, PHH1, ATCRY2 \| cryptochrome 2 \| chr1:1185719-1187901 REVERSE LENGTH=612