barSeed - Barley Seed Development Database

Probe CUST_29944_PI390587928

Source Contig U35_6676

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29944_PI390587928	Hv_44K_v2	GTATAACATGTCGACTGGTTTAATCTATTGATGAAGCACAAACTAGTTGAGACAGTGTAA	1113	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.207	1.525	1.203	0.919	0.486	0.559
Raw	311.317	620.554	418.753	496.924	94.539	116.401

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366549	2859	6e-24	2799 - 2857	100	59 / 59	plus	ABC14131
MLOC	MLOC_76614.1	727	6e-24	418 - 476	100	59 / 59	plus	ABC14131
JLOC1	JLOC1_51092.1	645	3e-24	499 - 557	100	59 / 59	plus
Harvest21	ABC14131	1184	3e-25	1114 - 1173	100	60 / 60	plus	ABC14131
Harvest35	U35_6676	1184	3e-25	1114 - 1173	100	60 / 60	plus

Contig Sequence (1184 bp)

>U35_6676 1184 Hv_44K_v2
GGGCCCCCTCTTCCATGCACTTGTGCATGGTAATATTGACACGAATGATGAGAGCACATG
CATGCTAGCTTTACCTGCTATTCACCCATCTGGATTTGGTGAAGGACCATCGTGCAGTTT
AGGACAGCAGGATTTATTTGATAACTCCCAAAGCTTGATGTTGTACAATCCTGTTCAAGT
GCCTGATCACATGAATTACAACTCACATGATAATCAATCAGAATTGCAAGGTGCCTCTGC
TCTACAGAACTGTATGCCATCACATGCATTGTCAGATTTGGGTCTTCAAGACCCTATTGC
GTCCGCGCCGGCATCAGCTCTACCAGAAGAATGCTTGGACATTGAAAATGATATTCCAAA
CTACTACGATTTAGAAGCCCTGATACTTGATCAGGATCTAATTCCATGGGACCAGGCTGA
TTCATCTCACCCTGCAGTTTCCAGATTTGATCATCCAGAGAACAGGAAATCATTGATAAG
GTTGGAGCAGGGTGCTCGGTCTTATGTGAACCGAGGTATCATGTCTCGAGGTGCCTTTGC
AGTTATCTATGGATTGCACTTGAAGTACTACATAAAGGACCCTGAGGTTATTCTGGGAAG
AGAGACAGAAGATGTAAAAGTAGACATAGATTTGGCAAAAGAAGGGCGGGCGAACAAAAT
ATCTCGCCGACAGGCGGTTATCAAGATGGATAAAAATGGGTCTTTCCATATCAAGAACAT
TGGGAAATGCTCAATCTTTGTTAATAGCAAGGAAGTGCCAAGCTGCAAAGGGATCAACTT
AAGTTCTGATTCTTTAATCGAGATAAAGGAGATGAGGCTGATCTTCCACTCGAATCAGGA
TGCTGTAAGGCAGTACATTGCCCGCACCGCGAAGCTCCAATACTCGTACCAGCCGGGTTT
CTGAGCTTCGCTCCAATACTCGTACCAGCCAGGTTTCTGAGCCCGCTTGCCAAGGTTGCC
CGATGAGCGGCGCGTCTGCGTTGCTGCCAGTAGTTAGCGCGTCAGGTGTTCCAGGGCGTT
CACGTTTTAGATGAGAGTGTGATTATTACTATTATCTCGGTAGATGTTCTCGGCCACTTG
GGATGCGTGTATATACATACACGGCAACATGTGGTATAACATGTCGACTGGTTTAATCTA
TTGATGAAGCACAAACTAGTTGAGACAGTGTAAAAAAAAAAAAA

Homology of Contig U35_6676 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g58640.1	857	2e-136	protein\|FHA domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g05130.1	854	4e-157
Arabidopsis v10	AT3G54350.1	702	1e-53	\| Symbols: emb1967 \| Forkhead-associated (FHA) domain-containing protein \| chr3:20122298-20126031 REVERSE LENGTH=702