barSeed - Barley Seed Development Database

Probe CUST_29942_PI390587928

Source Contig U35_6678

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29942_PI390587928	Hv_44K_v2	TGTGCCCTACTTGTACCAAAGAATGGTCCAATAAAGTGCTTATGAGTTGTGCCTGTCAAA	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64486.1	1470	9e-22	1 - 58	98	57 / 58	minus	ABC30693
MLOC	MLOC_64485.2	3469	9e-22	1757 - 1814	98	57 / 58	minus	ABC30693
JLOC1	JLOC1_42349.1	1500	5e-22	1400 - 1457	98	57 / 58	plus
Harvest21	ABC30693	600	3e-25	531 - 590	100	60 / 60	plus	ABC30693
Harvest35	U35_6678	604	3e-25	531 - 590	100	60 / 60	plus

Contig Sequence (604 bp)

>U35_6678 604 Hv_44K_v2
GCCTACGCGGCGAAGCTCCGCGGGCGGTGCCCCCGGTCCGGCGGCGACCAGATCCTGTTC
GCCCTCGACCCCGCCACCCAGTTCCGGTTCGACAACCAGTACTACAAGAACATCCTGGCC
ATGAACGGCCTGCTCAACTCCGACGAGGTCCTGCTCACGCAGAGCCACGAGACCATGGAG
CTCGTCAAGAGCTACGCCGCCAGCAACGAGCTCTTCTTCGACCACTTCGCCAAGTCCATG
GTCAAGATGGGCAACATCTCGCCGCTCACAGGCCAAAACGGCGAGATCAGGAAGAACTGC
AGGAGGGTCAACCACTTCTAATTCTAAACAAACCCATCCAGAGCGACACTCTTCGAAGCT
GGCCCGGTGATTTCGATGGTCGTGCTTCGAGCTTCTTTCTTGATTTGCAATGTTTCTTTC
TTTCAAGTGCATGCGTGTGATTATTGCATTCCCTTATTCGTGTTGCGCCGTAAAATGGTT
GCGGTCGTGTTTTGTTCCTTTTCTTTAGTTGTTGATATTCATCTGTGCAGTGTGCCCTAC
TTGTACCAAAGAATGGTCCAATAAAGTGCTTATGAGTTGTGCCTGTCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_6678 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g34630.1	346	3e-55	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g10070.1	335	5e-61
Arabidopsis v10	None