barSeed - Barley Seed Development Database

Probe CUST_29935_PI390587928

Source Contig U35_44315

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29935_PI390587928	Hv_44K_v2	AGTTCGTCGGCGACCGGTTCGTCGGGAAGGAGGGGAGCAAGCTGCTGAAGTACGTGTACT	327	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21933.2	2279	2e-24	1473 - 1532	100	60 / 60	plus	ABC03096 ABC03097
JLOC1	JLOC1_15208.1	2268	8e-25	1482 - 1541	100	60 / 60	plus
Harvest21	ABC41941	429	3e-25	328 - 387	100	60 / 60	plus
Harvest21	ABC03097	1872	3e-25	1284 - 1343	100	60 / 60	plus	ABC03097
Harvest35	U35_44315	429	3e-25	328 - 387	100	60 / 60	plus
Harvest35	U35_857	1932	3e-25	1347 - 1406	100	60 / 60	plus

Contig Sequence (429 bp)

>U35_44315 429 Hv_44K_v2
CAGCCCGCGTGGTCGCCGTGCTCGACGCCAAGAGCTTCCCCGTGCTCTTCGACGTCACCA
AGGTCGAGAAGAAGAACCTCTTCACCGGCACCTACATGCCCTCCACCTCCCTCACCGGCG
GCTTCCGCGTCTGCTCCTACCTCGACCCCTCCGAGCCCACCCACACCAAGGTCAAGCAGC
TGCTCTTCTCCCTCCTCGCCTCGCGCAAGGACGCCTTCATCCCGGCCTTCCGCTCCCACT
TCTCCTCGCTGCTCGCCACCGTCGAGTCGCAGCTCCTTCTCAGCGGCAAGTCCAACTTCA
ACACGCTCAACGACGCCACCTCCTTCGAGTTCGTCGGCGACCGGTTCGTCGGGAAGGAGG
GGAGCAAGCTGCTGAAGTACGTGTACTGGTCGAACGGGCGGGAGACCGAGAGCCCCAGCG
TGCACAACA

Homology of Contig U35_44315 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g12500.1	479	1e-52	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi1g69330.1	487	1e-64
Arabidopsis v10	None