barSeed - Barley Seed Development Database

Probe CUST_29934_PI390587928

Source Contig U35_44316

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29934_PI390587928	Hv_44K_v2	TAACCTTCTACTATGTACTCAACGAAATGTCCACTGCAGACAATGGCTAATGACATGGTA	446	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36965.1	2659	2e-24	22 - 81	100	60 / 60	plus	ABC00385 ABC00840 ABC42711
MLOC	MLOC_36964.3	1805	2e-24	1044 - 1103	100	60 / 60	plus	None
Harvest21	ABC41942	556	3e-25	447 - 506	100	60 / 60	plus
Harvest35	U35_44316	556	3e-25	447 - 506	100	60 / 60	plus

Contig Sequence (556 bp)

>U35_44316 556 Hv_44K_v2
AGGCGCCACAATTCGATCGACACAAGAACCGGTTGATCTGAACTGGTTTGCCAAACATTG
GACGTTTACAGGGGTGGACACGCATCTCGTCGAGAGGATCCTCGACCCGGCGGCGCTCGA
CGGGATGGCGAGCCCGTTCAGGGATCTCCAGGGGCTGCTGAGAGCCGCAGGGACGTCGGC
CGTCGCCTGGGTTGGGGAGTCCGGAGGTGCTTACAACAGTGGGCATCACCTTGTCACCGA
TGCATTTGTCTTCAGCTTCTGGTTCCTGGATCAGCTGGGCATGTCAGCGAAATTCGACAC
CAAGAGCTACTGTAGGCAGAGCTTCATCGGTGGCAACTATGGCCTGCTGAACACAACCAC
ATTCCAGCCAAATCCTGACTACTACAGGTAGGATCAGTATGCTACATAACCTTCTACTAT
ACTACAGGTAGGATCAGTATGCTACATAACCTTCTACTATGTACTCAACGAAATGTCCAC
TGCAGACAATGGCTAATGACATGGTANGAACTTGCCTGAAAGTGTGTGATGTTTAACCTC
CATGACATATCTTCCT

Homology of Contig U35_44316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08090.2	526	1e-56	protein\|heparanase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi1g47760.1	539	1e-59
Arabidopsis v10	None