barSeed - Barley Seed Development Database

Probe CUST_29932_PI390587928

Source Contig U35_20360

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29932_PI390587928	Hv_44K_v2	GCAACATTGCCTTCACAACTCGGTGTGCTACAATCAATCATACATATTAAATTCCAAAAA	1403	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.411	0.620	0.774	1.910	1.768	1.169
Raw	6.931	15.495	18.353	70.967	21.950	15.995

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_2213.1	1497	1e-22	1435 - 1490	100	56 / 56	plus
Harvest35	U35_20360	1474	3e-25	1404 - 1463	100	60 / 60	plus

Contig Sequence (1474 bp)

>U35_20360 1474 Hv_44K_v2
GGATTGCAACCGCCCGCCTACTCGATTAGCTTCTCGAGATCTCCCGGGCGTTGCCATGGC
CATGCAGGGGCATAAGCCGCTGGCGGCCATGGTGGTGGTGCAGTGCATCTACGCGGCCAT
GGCGCTCTGGGCCAAGGCCATGTTCAGCCGCGGCATGAGCCCCATGGTCTTCGTCGTCTA
CAGGCAGGCCATCGCCACCCTTGTCCTCGTCCCCATCACCTTGCTTGCCAACAGGAAAAG
GCTGAGGGAGATTGTTTGCATCGGAACGACGGGCTTCGCGCTGGTGTTCTTGGCCTCTCT
TGTCGGGGCGACGGCGGATCAGTACATGTACTACCAAGGCATGTACCTGGGATCATCGTC
CATGGCGACGGCCATGACGAACCTTATACCGGCGATCACCTTCGTGCTGGCGACGTCAGT
AGGTCTAGAAAGCGTGGAGATCAGGAAGCCGCGAAGCATGGCCAAGGTATTCGGCACCGC
CGTCTGCGTCGGAGGCGCCATGGTCATGGCCTTCTTCAAGGGCCCCAAGCTGCTGGGGGT
CGGCGGCGGCGCCGGGCTGGACCTCTACGGCCTGCTTCTCAGCTCGCCGGCGAGCCGGAA
ATGGGTGATCGGCGCGCTGTTCCTCGTGGGCAGCAGCTCCTGCTGGTCGCTCTGGCTCAT
CCTGCAGGTGCCGATCTGCAAGTCGTACGTGGATCCCCTGACGCTGTCGGCCTGGATGTG
CTTCCTGTCCGTGGCGCAGATGGCGTTGCTCAGCTCCTTCGCGGTGCCGGACATGGACGC
CTGGAAGATCAACTCGCTCTTCGAGCTCATGGGCTGCATCTTCGCCGGCGCGGTTGGGTC
AGGGGTGACGTTCTACCTGCAGTCGTGGTGCATAACGGTGAGGGGGCCTCTCTACTCGGC
CATGTTCAACCCCCTCTGCACCGTCGTCACCACCGTGCTCGCCACCATCTTCCTCCACGA
ACAGCCGCACATCGGAAGCTTGTTGGGTGCGTTCGCCGTGGTCGCGGGGCTGTACATCGT
GCTGTGGGGCAAAGCAGGGGACGTCAAGACCCGGAGGGCGGCGGAGCGCGCCGATGATCT
GGAAAAGACATGGTCGGACTCGCAGCTCCTCGACGCGGAAAGCACGACCACCGAGCCGCT
CCTAGCGGACGACAACCGGATCGAGAAGTAGGGGCTCTGCAATTTTGGAATAGCCGGTGA
CCTCAGCTCATGGTCTTATATATGAGCTCTATAGCTCCAGCCTCCAGGGTTGTTTTTCGA
GGGAGAGTACTAGTGTGCTGGTGGAGCATGTGGCCATGGCCATGGCCATGATGACGCCGC
TAATGTACAAAAAGATGAGATAATGCCCGTAAATGTTGTTGAGTCCCACAAATTTAAGAT
GAGCTAGGGCATTACCAGTTACGGCAACATTGCCTTCACAACTCGGTGTGCTACAATCAA
TCATACATATTAAATTCCAAAAAAAAAAAAAAAA

Homology of Contig U35_20360 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25810.2	375	1e-160	protein\|nodulin, putative, expressed
Brachypodium v1_2	Bradi4g30740.1	315	4e-164
Arabidopsis v10	AT4G30420.1	373	1e-90	nodulin MtN21 /EamA-like transporter family protein \| chr4:14877069-14878914 FORWARD LENGTH=373