barSeed - Barley Seed Development Database

Probe CUST_29931_PI390587928

Source Contig U35_20361

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29931_PI390587928	Hv_44K_v2	ACATATGGTTAGATGGATCCGCAACATTGGCATACAGAGTTCCAGGAAACGCTCAAAAAA	1000	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.612	1.453	1.061	0.887	0.472	0.360
Raw	607.752	843.806	549.175	708.066	136.393	113.040

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_20361	1071	3e-25	1001 - 1060	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_20361 1071 Hv_44K_v2
GGCCTGCAGGCTGCCTCCCTAAAAAAACTAGGAAAAACAGTCTCCTCGCCGGCCAGTCGT
CCTCGCCGTCGCCCTACCCATCTCGCCGGCGCCGTCGAAGGCCCGCGGGAAGCATGGATG
CCATGGAGGAGGATACGCCTCCCGCGCCACCGCTACCGCCACCGCCTACGACGGGCGCGA
AGCAGCCGCCGTACAAGGATCCTGACGACGGGAGGCAGCGGTTCCTCCTGGAGCTGGAGT
TCATCCAGTGCCTGGCCAACCCCATCTACATCAACTACCTAGCGCAGAATCGGTACTTTG
AGGATGAGGCGTTTATCGGGTATCTCAAGTACCTCAAGTATTGGCAGCGTCCGGAGTACA
TCAAATACATAATGTATCCGCACTGCCTTTTCTTTCTTGAGCTCCTCCAAAATGCAAATT
TCCGAAACGCAATGGCACATCCAGCAAGCAAGGAAGTTGCTCATAGGCAGCAATATTTCT
TCTGGAAAAACTACAGGAACAATAGACTGAAGCACATCCTGCCCCGTCCTCCTCCTGAAC
CAACTCCTGCGCCTGCACCAGCACCAGTGCCAACGCCTCCGCCTGTTCCTGCAGCACCAT
CATCTTTGCCAACTATGTCAGCTGTTGGTGCATCTGCAATGCCCCCCATGCAGTTTATAG
GAACTCCTGGCACCAACAACCCAAAGAATGACATGAGAAATGTTATGGGTGGTAGAAAGA
GAAAGATGGGCTAGTGAAACATATTGATCAACTTCACGGCTGACGGCATTCCATGGAAGT
GGAAACTTGCCTCGTTGTTATTAGATCTTTGAAGTAGTAGCAGACAAGCTTGTAGCAGCT
CATGCTTTCGAGTAGCTGGAGATGTCCACATGGCATGCACACTTGGCACTTTATTGACTT
ATAATCATTTATCTTATCTTAGCCTTGTTGTAGTTGAATTGAATCTTTACTTGCTGAAAC
TTCGTGCCGACGGTGGCAGCCGTAAAAGCCAACATTTAGCACATATGGTTAGATGGATCC
GCAACATTGGCATACAGAGTTCCAGGAAACGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20361 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41450.1	203	2e-92	protein\|mediator of RNA polymerase II transcription subunit 31, putative, expressed
Brachypodium v1_2	Bradi3g33620.1	190	2e-97
Arabidopsis v10	AT5G19910.2	226	3e-64	\| Symbols: MED31 \| SOH1 family protein \| chr5:6731484-6732821 REVERSE LENGTH=226