barSeed - Barley Seed Development Database

Probe CUST_29930_PI390587928

Source Contig U35_20362

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29930_PI390587928	Hv_44K_v2	TCTTTGTGGACTTCAAAGACTTGTATTACTACAATGGCAACAAGTTACCCTTCGCTGCAG	761	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80818.4	2961	2e-24	762 - 821	100	60 / 60	plus	ABC08774 ABC48895
MLOC	MLOC_80818.3	2919	2e-24	1842 - 1901	100	60 / 60	plus	ABC08774
MLOC	MLOC_80818.1	4027	2e-24	2400 - 2459	100	60 / 60	plus	ABC08774 ABC48895
MLOC	MLOC_80818.2	4665	2e-24	2394 - 2453	100	60 / 60	plus	ABC08774 ABC48895
JLOC1	JLOC1_53799.3	2129	8e-25	417 - 476	100	60 / 60	plus
JLOC1	JLOC1_53799.2	2032	8e-25	418 - 477	100	60 / 60	plus
JLOC1	JLOC1_53799.1	2019	8e-25	405 - 464	100	60 / 60	plus
Harvest21	ABC14653	824	3e-25	762 - 821	100	60 / 60	plus
Harvest35	U35_20362	824	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_20362 824 Hv_44K_v2
CCGCCTCCTCTCGTCCTCCTCTCGCGCCATCGCAACAAAACCTCACCCACCGCAAACCTT
AGCCGCTGCTGCAGCTGGCGCCACCACCTCAACCACCCGGAAGCTGGCAGCCATGGCAGG
TAACCGGGAGGCGTTCCGCGTGGTGGTGGCGAACACGCTCGAGCGGCGCCTCTTCTACGT
GCCGTCCTTCAAGATCTACGGAGGCGTCGCGGGGCTCTATGACTACGGGCCGCCAGGGTG
CGCCGTCAAGGCCAACGTACTCGCCTCCTGGCGCCAGCATTTCGTGTTGGAGGAAGGGAT
GCTTGAGGTGGACTGTCCATGTGTGACACCAGAAATTGTCTTGAAGGCCTCTGGCCATGT
TGAGAAGTTTACGGACTTGATGGTTAAAGATGAAAAGATGGGCAACTGTTATCGTGCTGA
TCACTTACTCAAGGACTTCTGTAAGGAGAAGCTCGAGCAAGACACTACATTGTCACCAGA
GAAGGTAGAAGAATTAAACCATATTCTTGCTGTCTTGGATGATCTGTCAGCAGAACAATT
AGGTGCTAAGATTAAGGAGTATGGGATTGTTGCTCCCGACACAAAGAATCCTTTGTCAGA
TCCATACCCCTTTAATCTCATGTTTCAGACTTCCATTGGACCATCAGGTTTGAGCGCAGG
GTGAGATTAAAAACCGCTATGTTCTCCTTTGTTCGATATAGTTTTAGCTCATCTGCTACA
TCTGTTTTGCAGGTATATGAGGCCAGAGACAGCACAGGGTATCTTTGTGGACTTCAAAGA
CTTGTATTACTACAATGGCAACAAGTTACCCTTCGCTGCAGCAC

Homology of Contig U35_20362 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32650.1	674	2e-135	protein\|tRNA synthetase class II core domain containing protein, expressed
Brachypodium v1_2	Bradi3g41550.1	692	2e-124
Arabidopsis v10	AT1G29880.1	729	8e-118	glycyl-tRNA synthetase / glycine--tRNA ligase \| chr1:10459662-10462781 REVERSE LENGTH=729