barSeed - Barley Seed Development Database

Probe CUST_29929_PI390587928

Source Contig U35_20363

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29929_PI390587928	Hv_44K_v2	TGTTTATGTACAAGATATACCTCCGTATGATAAAGACGCTATACTTGCCGGGGTAAAAAA	1150	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366800	1838	7e-23	1688 - 1744	100	57 / 57	plus	ABC13522
MLOC	MLOC_2950.1	1938	3e-21	67 - 123	98	56 / 57	minus	ABC13522
MLOC	MLOC_2950.2	1439	3e-21	67 - 123	98	56 / 57	minus	ABC13522
JLOC1	JLOC1_1763.1	1544	2e-21	1318 - 1374	98	56 / 57	plus
Harvest21	ABC13522	1082	3e-25	1012 - 1071	100	60 / 60	plus	ABC13522
Harvest35	U35_20363	1221	3e-25	1151 - 1210	100	60 / 60	plus

Contig Sequence (1221 bp)

>U35_20363 1221 Hv_44K_v2
GGGGGCATCGTATACCACGGCATTCTCGAGGACGGCACACAGGTCGCCGTCAAGAATTTG
CTGAATAACAGGGGGCAGGCTGATAGGGAATTCAAGGTTGAGGTCGAAGCAATCGGGCGG
GTGCGGCACAAGAACCTCGTGCGGCTGCTTGGATACTGTGCTGAGGGCAACCAAAGGATG
CTTGTGTATGAGTTTGTCAATAATGGAACTTTGGAGCAATGGATTCATGGTGATGTTGGT
CCTGTGAGCCCTCTTACATGGGACATAAGAATGAAGATTATTCTCGGATCAGCAAAAGGT
TTAATGTATTTGCACGAGGGACTTGAGCCAAAGGTGGTTCACCGTGATGTCAAGTCAAGC
AATATCCTACTTGACAAGCATTGGAACGCTAAGCTTTCTGATTTTGGGCTAGCAAAGCTT
TTGGGCTCCGAGAGGAGTTACGTCACGACCAGGGTCATGGGGACATTTGGGTATGTTGCT
CCAGAGTATGCAGGCACCGGCATGCTGAATGAAACTAGTGATGTCTATAGTTTTGGGATT
CTTATTATGGAAATAATATCTGGTAGGGTACCAGTAGATTACAACAGGCCACCTGGAGAG
GTTAATCTCGTTGAATGGCTGAAGACGATGGTCAGCAGCCGAAATTCAGAGGGGGTTTTG
GATCCCAAGATGACCGAGAAGCCTACTTCAAGGGCACTGAAAAAGGCTTTGCTGGTGGCT
CTGCGATGTGTAGACCCTGAAGCTCGCAAGAGGCCAAAGATTGGCCATGTGATTCACATG
CTTGAAGTTGATGATTTCCCCTACAGAGATGACCGCCGAGCTGGCAGAGCTCCAGGTCAA
GCCAAATTGACGGAAACAACTTCGGGTGAACCTGGTGATAGTAGCGGGAACGACACACCA
AGAGACACACCAAAAGGTCAATCAAAAGCCGACAATTCAAGGTGGAGAAATCAAGAGACC
TAGCTATCATGCAAACGGGCCTTTGTGGATGATCAAGGAAGAAGCTGTAGACTTACAAAC
AAGCTCGTTTGCTGCTCCATGGGTCGAGCCGGGTGCGGAAGGCATCTATGGAGAGATCGT
GATAGCATCTGTACATTACTGGATTAATTATGCTAGGCATAGGGATTTTTTGGTTGGTTT
CGTGGGATCGTGTTTATGTACAAGATATACCTCCGTATGATAAAGACGCTATACTTGCCG
GGGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20363 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g35080.1	527	0.0	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi5g10150.1	509	0.0
Arabidopsis v10	AT1G01540.2	472	1e-153	Protein kinase superfamily protein \| chr1:195980-198383 FORWARD LENGTH=472